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Hidden Treasures in Contemporary RNA Sequencing, Serghei Mangul; Harry Taegyun Yang; Eleazar Eskin;


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Автор: Serghei Mangul; Harry Taegyun Yang; Eleazar Eskin;
Название:  Hidden Treasures in Contemporary RNA Sequencing
ISBN: 9783030139728
Издательство: Springer
Классификация:



ISBN-10: 3030139727
Обложка/Формат: Soft cover
Страницы: 93
Вес: 0.23 кг.
Дата издания: 2019
Серия: SpringerBriefs in Computer Science
Язык: English
Издание: 1st ed. 2019
Иллюстрации: 48 illustrations, color; 1 illustrations, black and white; v, 93 p. 49 illus., 48 illus. in color.
Размер: 231 x 211 x 5
Читательская аудитория: Professional & vocational
Основная тема: Computer Science
Ссылка на Издательство: Link
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Поставляется из: Германии
Описание:
Advances in RNA-sequencing (RNA-seq) technologies have provided an unprecedented opportunity to explore the gene expression landscape across individuals, tissues, and environments by efficiently profiling the RNA sequences present in the samples. When a reference genome sequence or a transcriptome of the sample is available, mapping-based RNA-seq analysis protocols align the RNA-seq reads to the reference sequences, identify novel transcripts, and quantify the abundance of expressed transcripts.
The reads that fail to map to the human reference, known as unmapped reads, are a large and often overlooked output of standard RNA-seq analyses. Even in carefully executed experiments, the unmapped reads can comprise a considerable fraction of the complete set of reads produced, and can arise due to technical sequencing produced by low-quality and error-prone copies of the nascent RNA sequence being sampled. Reads can also remain unmapped due to unknown transcripts, recombined B and T cell receptor sequences, A-to-G mismatches from A-to-I RNA editing, trans-splicing, gene fusion, circular RNAs, and the presence of non-host RNA sequences (e.g. bacterial, fungal, and viral organisms). Unmapped reads represent a rich resource for the study of B and T cell receptor repertoires and the human microbiome system—without incurring the expense of additional targeted sequencing.
This book introduces and describes the Read Origin Protocol (ROP), a tool that identifies the origin of both mapped and unmapped reads. The protocol first identifies human reads using a standard high-throughput algorithm to map them onto a reference genome and transcriptome. After alignment, reads are grouped into genomic (e.g. CDS, UTRs, introns) and repetitive (e.g. SINEs, LINEs, LTRs) categories. The rest of the ROP protocol characterizes the remaining unmapped reads, which failed to map to the human reference sequences.

Дополнительное описание: Abstract.- Main Text.- Acknowledgement.- Disclosure.- References.



Clinical Applications for Next Generation Sequencing

Автор: Urszula Demkow
Название: Clinical Applications for Next Generation Sequencing
ISBN: 0128017392 ISBN-13(EAN): 9780128017395
Издательство: Elsevier Science
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Цена: 12462.00 р.
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Описание:

Clinical Applications for Next Generation Sequencing provides readers with an outstanding postgraduate resource to learn about the translational use of NGS in clinical environments.

Rooted in both medical genetics and clinical medicine, the book fills the gap between state-of-the-art technology and evidence-based practice, providing an educational opportunity for users to advance patient care by transferring NGS to the needs of real-world patients.

The book builds an interface between genetic laboratory staff and clinical health workers to not only improve communication, but also strengthen cooperation. Users will find valuable tactics they can use to build a systematic framework for understanding the role of NGS testing in both common and rare diseases and conditions, from prenatal care, like chromosomal abnormalities, up to advanced age problems like dementia.

Biology, Computing, and the History of Molecular Sequencing

Автор: Garc?a-Sancho
Название: Biology, Computing, and the History of Molecular Sequencing
ISBN: 0230250327 ISBN-13(EAN): 9780230250321
Издательство: Springer
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Цена: 12577.00 р.
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Описание: Sequencing is often associated with the Human Genome Project and celebrated achievements concerning the DNA molecule. However, the history of this practice comprises not only academic biology, but also the world of computer-assisted information management. The book uncovers this history, qualifying the hype and expectations around genomics.

Next-Generation Sequencing: Current Technologies and Applications

Автор: Xu Jianping
Название: Next-Generation Sequencing: Current Technologies and Applications
ISBN: 1908230339 ISBN-13(EAN): 9781908230331
Издательство: Неизвестно
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Цена: 45980.00 р.
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Bioinformatics: A Practical Handbook Of Next Generation Sequencing And Its Applications

Автор: Low Lloyd Wai Yee Et Al
Название: Bioinformatics: A Practical Handbook Of Next Generation Sequencing And Its Applications
ISBN: 9813144742 ISBN-13(EAN): 9789813144743
Издательство: World Scientific Publishing
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Цена: 12672.00 р.
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Описание:

Rapid technological developments have led to increasingly efficient sequencing approaches. Next Generation Sequencing (NGS) is increasingly common and has become cost-effective, generating an explosion of sequenced data that need to be analyzed. The skills required to apply computational analysis to target research on a wide range of applications that include identifying causes of cancer, vaccine design, new antibiotics, drug development, personalized medicine and higher crop yields in agriculture are highly sought after.

This invaluable book provides step-by-step guides to complex topics that make it easy for readers to perform essential analyses from raw sequenced data to answering important biological questions. It is an excellent hands-on material for teachers who conduct courses in bioinformatics and as a reference material for professionals. The chapters are written to be standalone recipes making it suitable for readers who wish to self-learn selected topics. Readers will gain skills necessary to work on sequenced data from NGS platforms and hence making themselves more attractive to employers who need skilled bioinformaticians to handle the deluge of data.

Next Generation Sequencing

Автор: Steven R. Head; Phillip Ordoukhanian; Daniel R. Sa
Название: Next Generation Sequencing
ISBN: 1493975129 ISBN-13(EAN): 9781493975129
Издательство: Springer
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Цена: 20962.00 р.
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Описание:

This volume covers a wide range of various fields of research, with the common thread being Next Generation Sequencing (NGS) related methods and applications, as well as analysis and interpretation of the data obtained. Chapters guide readers through the highly dynamic processes of translational and transcriptional profiling of a cell, method to detect copy number alterations (CNAs), targeted sequencing applications, method called "Hi-Plex" to characterize known polymorphic loci, single-cell of DNA or RNA, identify and characterize rare circulating CD4 T cells, and computational pipeline for RNAseq analysis. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Next Generation Sequencing: Methods and Protocols aims to be useful and informative for further study into this vital field.

Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing

Автор: Aransay
Название: Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing
ISBN: 3319313487 ISBN-13(EAN): 9783319313481
Издательство: Springer
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Цена: 23508.00 р.
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Описание: High throughput sequencing (HTS) technologies have conquered the genomics and epigenomics worlds. The applications of HTS methods are wide, and can be used to sequence everything from whole or partial genomes, transcriptomes, non-coding RNAs, ribosome profiling, to single-cell sequencing. Having such diversity of alternatives, there is a demand for information by research scientists without experience in HTS that need to choose the most suitable methodology or combination of platforms and to define their experimental designs to achieve their specific objectives. Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing aims to collect in a single volume all aspects that should be taken into account when HTS technologies are being incorporated into a research project and the reasons behind them. Moreover, examples of several successful strategies will be analyzed to make the point of the crucial features. This book will be of use to all scientist that are unfamiliar with HTS and want to incorporate such technologies to their research.

Genetic Mapping and DNA Sequencing

Автор: Terry Speed; Michael Waterman
Название: Genetic Mapping and DNA Sequencing
ISBN: 0387948031 ISBN-13(EAN): 9780387948034
Издательство: Springer
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Цена: 25155.00 р.
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Описание: Statistics, mathematics and computing all play important roles in genetics mapping, physical mapping and DNA sequencing, the three key components of the human and other genome projects. This volume reviews recent progress in the area, with emphasis on the theory and application of genetic mapping.

Genome Sequencing in Clinical Practice

Автор: Tibben, Aad
Название: Genome Sequencing in Clinical Practice
ISBN: 012813335X ISBN-13(EAN): 9780128133354
Издательство: Elsevier Science
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Цена: 11613.00 р.
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Описание:

Clinical Genome Sequencing: Psychological Aspects thoroughly details key psychological factors to consider while implementing genome sequencing in clinical practice, taking into account the subtleties of genetic risk assessment, patient consent and best practices for sharing genomic findings. Chapter contributions from leading international researchers and practitioners cover topics ranging from the current state of genomic testing, to patient consent, patient responses to sequencing data, common uncertainties, direct-to-consumer genomics, the role of genome sequencing in precision medicine, genetic counseling and genome sequencing, genome sequencing in pediatrics, genome sequencing in prenatal testing, and ethical issues in genome sequencing.

Applied clinical case studies support concept illustration, making this an invaluable, practical reference for this important and multifaceted topic area within genomic medicine.

  • Features contributions from leading international researchers and practitioners versed in the psychosocial dimensions of genomic medicine implementation
  • Presents clinical case studies that support concept illustration, making this an invaluable reference for students, researchers, and clinicians looking for practical guidance in this important and multifaceted topic area
  • Details the current state of genomic testing, expectations of genome sequencing, patient consent, patient responses to sequencing data, uncertainties in genome sequencing, direct-to-consumer genome sequencing, and more

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