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Using Mass Spectrometry for Biochemical Studies on Enzymatic Domains from Polyketide Synthases, Jenner Matthew


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Автор: Jenner Matthew
Название:  Using Mass Spectrometry for Biochemical Studies on Enzymatic Domains from Polyketide Synthases
ISBN: 9783319813554
Издательство: Springer
Классификация:






ISBN-10: 3319813552
Обложка/Формат: Paperback
Страницы: 176
Вес: 0.28 кг.
Дата издания: 27.05.2018
Серия: Springer theses
Язык: English
Издание: Softcover reprint of
Иллюстрации: 50 tables, color; 99 illustrations, color; 37 illustrations, black and white; xviii, 176 p. 136 illus., 99 illus. in color.; 50 tables, color; 99 illu
Размер: 23.39 x 15.60 x 1.07 cm
Читательская аудитория: General (us: trade)
Ссылка на Издательство: Link
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Поставляется из: Германии
Описание: This thesis reports studies on the substrate specificity of crucial ketosynthase (KS) domains from trans-AT Polyketide Synthases (PKSs). Using a combination of electrospray ionisation-mass spectrometry (ESI-MS) and simple N-acetyl cysteamine (SNAC) substrate mimics, the specificity of a range of KS domains from the bacillaene and psymberin PKSs have been succsessfully studied with regard to the initial acylation step of KS-catalysis. In addition, the ability to alter the substrate tolerance of KS domains by simple point mutations in the active site has been demonstrated. A series of acyl-ACPs have been synthesised using a novel methodology and employed to probe the substrate specificity of both KS domains and the previously uncharcterised acyl hydrolase domain, PedC. KS-catalysed chain elongation reactions have also been conducted and monitored by ESI-MS/MS. All KS domains studied exhibited higher substrate specificity at the elongation step than in the preceeding acylation step. Furthermore, a mechanism of reversible acylation is proposed using the PsyA ACP1-KS1 di-domain. The findings in this thesis provide important insights into mechanisms of KS specificity and show that mutagenesis can be used to expand the repertoire of acceptable substrates for future PKS engineering.
Дополнительное описание: Introduction.- Materials and Methods.- Substrate Specificity of Ketosynthase Domains Part I: ?-Branched Acyl Chains.- Substrate Specificity of Ketosynthase Domains Part II: Amino Acid-Containing Acyl Chains.- Synthesis of Acyl-Acyl Carrier Proteins and th



Using Mass Spectrometry for Biochemical Studies on Enzymatic Domains from Polyketide Synthases

Автор: Matthew Jenner
Название: Using Mass Spectrometry for Biochemical Studies on Enzymatic Domains from Polyketide Synthases
ISBN: 3319327224 ISBN-13(EAN): 9783319327228
Издательство: Springer
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Описание: Introduction.- Materials and Methods.- Substrate Specificity of Ketosynthase Domains Part I: β-Branched Acyl Chains.- Substrate Specificity of Ketosynthase Domains Part II: Amino Acid-Containing Acyl Chains.- Synthesis of Acyl-Acyl Carrier Proteins and their use in Studying Polyketide Synthase Enzymology.- Substrate Specificity of Ketosynthase Domains Part III: Elongation-Based Substrate Specificity.

Enzymatic and Model Carboxylation and Reduction Reactions for Carbon Dioxide Utilization

Автор: M. Aresta; J.V. Schloss
Название: Enzymatic and Model Carboxylation and Reduction Reactions for Carbon Dioxide Utilization
ISBN: 940106783X ISBN-13(EAN): 9789401067836
Издательство: Springer
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Описание: Proceedings of the NATO Advanced Study Institute, Riva dei Tessali, Italy, June 17-28, 1989

Natural Products via Enzymatic Reactions

Автор: J?rn Piel
Название: Natural Products via Enzymatic Reactions
ISBN: 3642265596 ISBN-13(EAN): 9783642265594
Издательство: Springer
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Цена: 36570.00 р.
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Описание: Key Building Blocks via Enzyme-Mediated Synthesis, by Thomas Fischer and J rg Pietruszka
*
Engineered Biosynthesis of Plant Polyketides: Structure-Based and Precursor-Directed Approach, by Ikuro Abe
*
Enzymatic and Chemo-Enzymatic Approaches Towards Natural and Non-Natural Alkaloids: Indoles, Isoquinolines, and Others, by Joachim St ckigt, Zhong Chen, and Martin Ruppert
*
Chemoenzymatic and Bioenzymatic Synthesis of Carbohydrate Containing Natural Products, by Bohdan Ostash, Xiaohui Yan, Victor Fedorenko, and Andreas Bechthold
*
Total (Bio)Synthesis: Strategies of Nature and of Chemists, by Alexandra A. Roberts, Katherine S. Ryan, Bradley S. Moore, and Tobias A.M. Gulder

Nonribosomal Peptide and Polyketide Biosynthesis

Автор: Bradley Evans
Название: Nonribosomal Peptide and Polyketide Biosynthesis
ISBN: 1493980343 ISBN-13(EAN): 9781493980345
Издательство: Springer
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Описание:

Part I: Background and Overview

1. Structural Biology of Nonribosomal Peptide Synthetases

Bradley R. Miller and Andrew M. Gulick

2. The Assembly Line Enzymology of Polyketide Biosynthesis

Marisa Till and Paul R. Race

Part II: In Vitro Methods

3. Measurement of Nonribosomal Peptide Synthetase Adenylation Domain Activity Using a Continuous Hydroxylamine Release Assay

Benjamin P. Duckworth, Daniel J. Wilson, and Courtney C. Aldrich

4. Affinity Purification Method for the Identification of Nonribosomal Peptide Biosynthetic Enzymes Using a Synthetic Probe for Adenylation Domains

Fumihiro Ishikawa and Hideaki Kakeya

5. Colorimetric Detection of the Adenylation Activity in Nonribosomal Peptide Synthetases

Chitose Maruyama, Haruka Niikura, Masahiro Takakuwa, Hajime Katano, and Yoshimitsu Hamano

6. Facile Synthetic Access to Glycopeptide Antibiotic Precursor Peptides for the Investigation of Cytochrome P450 Action in Glycopeptide Antibiotic Biosynthesis

Clara Brieke, Veronika Kratzig, Madeleine Peschke, and Max J. Cryle

7. Reconstitution of Fungal Nonribosomal Peptide Synthetases in Yeast and In Vitro

Ralph A. Cacho and Yi Tang

8. The Continuing Development of E. coli as a Heterologous Host for Complex Natural Product Biosynthesis

Haoran Zhang, Lei Fang, Marcia S. Osburne, and Blaine A. Pfeifer

9. Screening for Expressed Non

ribosomal Peptide Synthetases and Polyketide Synthases Using LC‒MS/MS-Based Proteomics

Yunqiu Chen, Ryan A. McClure, and Neil L. Kelleher

10. Enhancing Nonribosomal Peptide Biosynthesis in Filamentous Fungi

Alexandra A. Soukup, Nancy P. Keller, and Philipp Wiemann

11. In Situ Analysis of Bacterial Lipopeptide Antibiotics by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging

Delphine Debois, Marc Ongena, Hйlиne Cawoy, and Edwin De Pauw

12. Secondary Metabolic Pathway-Targeted Metabolomics

Maria I. Vizcaino and Jason M. Crawford

Part III: Bioinformatic Methods

13. Annotating and Interpreting Linear and Cyclic Peptide Tandem Mass Spectra

14. Bioinformatics Tools for the Discovery of New Nonribosomal Peptides

Valйrie Leclиre, Tilmann Weber, Philippe Jacques, and Maude Pupin

15. The Use of ClusterMine360 for the Analysis of Polyketide and Nonribosomal Peptide Biosynthetic Pathways

Nicolas Tremblay, Patrick Hill, Kyle R. Conway, and Christopher N. Boddy

16. Alignment-Free Methods for the Detection and Specificity Prediction of Adenylation Domains

Guillermin Agьero-Chapin, Gisselle Pйrez-Machado, Aminael Sбnchez-Rodrнguez, Miguel Machado Santos, and Agostinho Antunes

17. Characterization of Nonribosomal Peptide Synthetases with NRPSsp

C

arlos Prieto

Nonribosomal Peptide and Polyketide Biosynthesis

Автор: Bradley Evans
Название: Nonribosomal Peptide and Polyketide Biosynthesis
ISBN: 1493933736 ISBN-13(EAN): 9781493933730
Издательство: Springer
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Цена: 19564.00 р.
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Описание:

This volume presents an overview of nonribosomal peptide synthetase (NRPS) and polyketide synthase (PKS) structure and function. It then continues with methods for the analysis of these pathways including conventional enzymological assays, contemporary mass spectrometric analysis techniques, specialized molecular biological approaches applicable to NRPSs and PKSs, and small molecule analysis tools tailored to this very special class of natural products, and concludes by examining bioinformatics tools for the analysis of these enzymes, pathways, and molecules. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Nonribosomal Peptide and Polyketide Biosynthesis: Methods and Protocols serves as a valuable reference for those experienced in studying NRPS and PKS enzymes, pathways, and natural products as well as a gateway for those just entering the field.

Molecular Structure, Function, and Assembly of the ATP Synthases

Автор: Sangkot Marzuki
Название: Molecular Structure, Function, and Assembly of the ATP Synthases
ISBN: 1461278821 ISBN-13(EAN): 9781461278825
Издательство: Springer
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Описание: In recent years, the ATP synthase (H+-ATPase, FoFrATPase) has been the subject of intensive IDvestigations in many laboratories. The major reason for this lies in the fact that this enzyme complex catalyses one of the most important reactions in living cells, namely the synthesis of ATP utilizing the energy from an electrochemical transmembrane H+ gradient, generated by the cellular respiratory chain or by the light reactions of photosynthetic organisms. The mechanism by which the H+ motive force is utilized to drive the synthesis of ATP is one of the major unsolved problems in biochemistry. Thus, the fundamental information concerning the-molecular structure and the mechanism of assembly of the ATP synthase is of major significance in cell biology. A seminar/workshop on the Molecular Structure, Function and Assembly of the ATP synthases was held in April, 1987 at the East-West Center, University of Hawaii, Honolulu, Hawaii, to promote exchange of information between laboratories actively engaged in the study of the A TP synthases, and to provide a forum for discussion and coordination of data derived from molecular, genetic and biochemical approaches used in different laboratories. This volume summarizes the result of the seminar/workshop, in the form of a collection of papers presented at the meeting, and provides an overvIew of current work in this rapidly progressing area of research.

Enzymatic Plastic Degradation, 648

Название: Enzymatic Plastic Degradation, 648
ISBN: 0128220120 ISBN-13(EAN): 9780128220122
Издательство: Elsevier Science
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Цена: 23244.00 р.
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Описание: Enzymatic Plastic Degradation, Volume 648 in the Methods in Enzymology series, continues the legacy of this premier serial with chapters authored by leaders in the field. Chapters in this latest release include Evaluating plastic pollution and environmental degradation, Assessment methods for microplastic pollution in the oceans and fresh water, Exploring microbial consortia from various environments for plastic degradation, Characterization of filamentous fungi for attack on synthetic polymers via biological Fenton chemistry, Synthesis of radioactive-labeled nanoplastics for assaying the environmental (microbial) PS degradation, Exploring metagenome for plastic degrading enzymes, Cutinases from thermophilic bacteria (actinomycetes): from identification to functional and structural characterization, and much more.

Enzymatic Analysis

Автор: Janet V. Passonneau; Oliver H. Lowry
Название: Enzymatic Analysis
ISBN: 0896032388 ISBN-13(EAN): 9780896032385
Издательство: Springer
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Цена: 28732.00 р.
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Описание: Enzymatic Analysis: A Practical Guide is a multipurpose manual of laboratory methods. The major changes, other than an appropriate interchange of authors, consist of a wholly new chapter of methods and protocols for measuring enzymes, the addition of 13 new entries in the metabolite chapter, and a much superior chapter on enzymatic cycling.

Enzymatic Synthesis of Structured Triglycerides

Автор: Mar?a Luj?n Ferreira; Gabriela Marta Tonetto
Название: Enzymatic Synthesis of Structured Triglycerides
ISBN: 331951573X ISBN-13(EAN): 9783319515731
Издательство: Springer
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Цена: 7685.00 р.
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Описание: This brief presents the state of the art on enzymatic synthesis of structured triglycerides and diglycerides, focusing on glycerol as the substrate and covering interesterification of vegetable oils in one and two steps.

Enzymatic Analysis

Автор: Janet V. Passonneau; Oliver H. Lowry
Название: Enzymatic Analysis
ISBN: 1489940146 ISBN-13(EAN): 9781489940148
Издательство: Springer
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Цена: 20896.00 р.
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Описание: Enzymatic Analysis: A Practical Guide is a multipurpose manual of laboratory methods. The major changes, other than an appropriate interchange of authors, consist of a wholly new chapter of methods and protocols for measuring enzymes, the addition of 13 new entries in the metabolite chapter, and a much superior chapter on enzymatic cycling.

Enzymatic Polymerizations,627

Автор: Bruns, Nico
Название: Enzymatic Polymerizations,627
ISBN: 0128170956 ISBN-13(EAN): 9780128170953
Издательство: Elsevier Science
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Описание:

Enzymatic Polymerizations, Volume 627 in the Methods in Enzymology series, continues the legacy of this premier serial with quality chapters authored by leaders in the field.

Regulation of Enzymatic Systems Detoxifying Xenobiotics in Plants

Автор: Kriton K. Hatzios
Название: Regulation of Enzymatic Systems Detoxifying Xenobiotics in Plants
ISBN: 0792346467 ISBN-13(EAN): 9780792346463
Издательство: Springer
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Описание: Discusses advances associated with the regulation of gene expression and enzymology of the major classes of xenobiotic degrading enzymes. This book also discusses genetic engineering of crops with plant or bacterial detoxification genes and chemical regulation of the enzymatic systems that detoxify xenobiotics in plants by herbicide safeners.


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