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Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R, Valiente, Gabriel


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Автор: Valiente, Gabriel
Название:  Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R
ISBN: 9781420069730
Издательство: Taylor&Francis
Классификация:



ISBN-10: 142006973X
Обложка/Формат: Hardback
Страницы: 368
Вес: 0.66 кг.
Дата издания: 08.04.2009
Серия: Chapman & hall/crc computational biology series
Язык: English
Иллюстрации: 89 illustrations, black and white
Размер: 236 x 155 x 23
Читательская аудитория: Professional & vocational
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Поставляется из: Европейский союз


Автор: Federico Echenique, Nicole Immorlica, Vijay V. Vaz
Название: Online and Matching-Based Market Design
ISBN: 1108831990 ISBN-13(EAN): 9781108831994
Издательство: Cambridge Academ
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Цена: 8710.00 р.
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Описание: The rich, multi-faceted and multi-disciplinary field of matching-based market design is an active and important one due to its highly successful applications with economic and sociological impact. Its home is economics, but with intimate connections to algorithm design and operations research. With chapters contributed by over fifty top researchers from all three disciplines, this volume is unique in its breadth and depth, while still being a cohesive and unified picture of the field, suitable for the uninitiated as well as the expert. It explains the dominant ideas from computer science and economics underlying the most important results on market design and introduces the main algorithmic questions and combinatorial structures. Methodologies and applications from both the pre-Internet and post-Internet eras are covered in detail. Key chapters discuss the basic notions of efficiency, fairness and incentives, and the way market design seeks solutions guided by normative criteria borrowed from social choice theory.

Market Design

Автор: Bichler Martin
Название: Market Design
ISBN: 1107173183 ISBN-13(EAN): 9781107173187
Издательство: Cambridge Academ
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Цена: 9346.00 р.
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Описание: The digital economy led to many new services where supply is matched with demand. This book introduces the fundamentals of market design, an engineering field at the intersection of computer science, economics, information systems, and operations research concerned with the design of real-world markets.

The Burrows-Wheeler Transform:

Автор: Donald Adjeroh; Timothy Bell; Amar Mukherjee
Название: The Burrows-Wheeler Transform:
ISBN: 1441946284 ISBN-13(EAN): 9781441946287
Издательство: Springer
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Цена: 23058.00 р.
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Описание: Here is a reference for seasoned professionals and researchers in the area that also provides a gentle introduction, making it accessible to senior undergraduate students or first-year graduate students embarking upon research in areas related to the BWT.

Methods in Medical Informatics

Автор: Berman, Jules J.
Название: Methods in Medical Informatics
ISBN: 1439841829 ISBN-13(EAN): 9781439841822
Издательство: Taylor&Francis
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Цена: 27562.00 р.
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Bioinspired Computation in Combinatorial Optimization

Автор: Frank Neumann; Carsten Witt
Название: Bioinspired Computation in Combinatorial Optimization
ISBN: 3642265847 ISBN-13(EAN): 9783642265846
Издательство: Springer
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Цена: 6986.00 р.
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Описание: This book shows how runtime behavior can be analyzed in a rigorous way and for combinatorial optimization in particular. It presents well-known problems such as minimum spanning trees, shortest paths, maximum matching, and covering and scheduling problems.

Biological Sequence Analysis Using the SeqAn C++ Library

Автор: Gogol-Doring
Название: Biological Sequence Analysis Using the SeqAn C++ Library
ISBN: 1138112828 ISBN-13(EAN): 9781138112827
Издательство: Taylor&Francis
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Цена: 11176.00 р.
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Описание:

An Easy-to-Use Research Tool for Algorithm Testing and Development

Before the SeqAn project, there was clearly a lack of available implementations in sequence analysis, even for standard tasks. Implementations of needed algorithmic components were either unavailable or hard to access in third-party monolithic software products. Addressing these concerns, the developers of SeqAn created a comprehensive, easy-to-use, open source C++ library of efficient algorithms and data structures for the analysis of biological sequences. Written by the founders of this project, Biological Sequence Analysis Using the SeqAn C++ Library covers the SeqAn library, its documentation, and the supporting infrastructure.

The first part of the book describes the general library design. It introduces biological sequence analysis problems, discusses the benefit of using software libraries, summarizes the design principles and goals of SeqAn, details the main programming techniques used in SeqAn, and demonstrates the application of these techniques in various examples. Focusing on the components provided by SeqAn, the second part explores basic functionality, sequence data structures, alignments, pattern and motif searching, string indices, and graphs. The last part illustrates applications of SeqAn to genome alignment, consensus sequence in assembly projects, suffix array construction, and more.

This handy book describes a user-friendly library of efficient data types and algorithms for sequence analysis in computational biology. SeqAn enables not only the implementation of new algorithms, but also the sound analysis and comparison of existing algorithms.

Visit SeqAn for more information.

Combinatorial Pattern Matching

Автор: Ferdinando Cicalese; Ely Porat; Ugo Vaccaro
Название: Combinatorial Pattern Matching
ISBN: 3319199285 ISBN-13(EAN): 9783319199283
Издательство: Springer
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Цена: 8944.00 р.
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Описание: This book constitutes the refereed proceedings of the 26th Annual Symposium on Combinatorial Pattern Matching, CPM 2015, held on Ischia Island, Italy, in June/July 2015. The 34 revised full papers presented together with 3 invited talks were carefully reviewed and selected from 83 submissions.

Combinatorial Pattern Matching

Автор: Paolo Ferragina; Gad M. Landau
Название: Combinatorial Pattern Matching
ISBN: 3540690662 ISBN-13(EAN): 9783540690665
Издательство: Springer
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Цена: 9781.00 р.
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Описание: Constitutes the refereed proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching, CPM 2008, held in Pisa, Italy, in June 2008. This book features 25 revised full papers which addresses various areas related to combinatorial pattern matching and its applications, such as coding and data compression, and computational biology.

Combinatorial Pattern Matching

Автор: Alexander S. Kulikov; Sergei O. Kuznetsov; Pavel P
Название: Combinatorial Pattern Matching
ISBN: 3319075659 ISBN-13(EAN): 9783319075655
Издательство: Springer
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Цена: 10201.00 р.
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Описание: This book constitutes the refereed proceedings of the 25th Annual Symposium on Combinatorial Pattern Matching, CPM 2014, held in Moscow, Russia, in June 2014. The goal is to derive combinatorial properties of such structures and to exploit these properties in order to achieve superior performance for the corresponding computational problems.

Algorithmics of Matching Under Preferences

Автор: Manlove David
Название: Algorithmics of Matching Under Preferences
ISBN: 9814425249 ISBN-13(EAN): 9789814425247
Издательство: World Scientific Publishing
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Цена: 26136.00 р.
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Описание: Matching problems with preferences are all around us - they arise when agents seek to be allocated to one another on the basis of ranked preferences over potential outcomes. Efficient algorithms are needed for producing matchings that optimise the satisfaction of the agents according to their preference lists. This book deals with this topic.

Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R

Автор: Valiente
Название: Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R
ISBN: 1138115347 ISBN-13(EAN): 9781138115347
Издательство: Taylor&Francis
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Цена: 11176.00 р.
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Описание:

Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic, and interactomic data. It implements the algorithms in Perl and R, two widely used scripting languages in computational biology.

The book provides a well-rounded explanation of traditional issues as well as an up-to-date account of more recent developments, such as graph similarity and search. It is organized around the specific algorithmic problems that arise when dealing with structures that are commonly found in computational biology, including biological sequences, trees, and graphs. For each of these structures, the author makes a clear distinction between problems that arise in the analysis of one structure and in the comparative analysis of two or more structures. He also presents phylogenetic trees and networks as examples of trees and graphs in computational biology.

This book supplies a comprehensive view of the whole field of combinatorial pattern matching from a computational biology perspective. Along with thorough discussions of each biological problem, it includes detailed algorithmic solutions in pseudo-code, full Perl and R implementation, and pointers to other software, such as those on CPAN and CRAN.

Combinatorial Pattern Matching

Автор: Alberto Apostolico; Maxime Crochemore; Zvi Galil;
Название: Combinatorial Pattern Matching
ISBN: 3540560246 ISBN-13(EAN): 9783540560241
Издательство: Springer
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Цена: 6567.00 р.
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Описание: Combinatorial pattern matching is a field dealing with the searching and matching of strings and other, more complicated patterns such as trees, regular expressions and extended expressions. This volume contains a series of papers presented at a symposium on the subject.


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