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RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods, Jan Gorodkin; Walter L. Ruzzo


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Автор: Jan Gorodkin; Walter L. Ruzzo
Название:  RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods
ISBN: 9781493961658
Издательство: Springer
Классификация:

ISBN-10: 1493961659
Обложка/Формат: Paperback
Страницы: 533
Вес: 0.94 кг.
Дата издания: 03.09.2016
Серия: Methods in Molecular Biology
Язык: English
Издание: Softcover reprint of
Иллюстрации: 28 tables, black and white; 46 illustrations, color; 74 illustrations, black and white; xi, 533 p. 120 illus., 46 illus. in color.
Размер: 254 x 178 x 28
Читательская аудитория: Professional & vocational
Основная тема: Life Sciences
Ссылка на Издательство: Link
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Поставляется из: Германии
Описание: The existence of genes for RNA molecules not coding for proteins (ncRNAs) has been recognized since the 1950s, but until recently, aside from the critically important ribosomal and transfer RNA genes, most focus has been on protein coding genes. However, a long series of striking discoveries, from RNAs ability to carry out catalytic function, to discovery of riboswitches, microRNAs and other ribo-regulators performing critical tasks in essentially all living organisms, has created a burgeoning interest in this primordial component of the biosphere. However, the structural characteristics and evolutionary constraints on RNA molecules are very different from those of proteins, necessitating development of a completely new suite of informatic tools to address these challenges. In RNA Sequence, Structure, Function: Computational and Bioinformatic Methods, expert researchers in the field describe a substantial and relevant fraction of these methodologies from both practical and computational/algorithmic perspectives. Focusing on both of these directions addresses both the biologist interested in knowing more about RNA bioinformatics as well as the bioinformaticist interested in more detailed aspects of the algorithms. Written in the highly successful Methods in Molecular Biology series format, the chapters include the kind of detailed description and implementation advice that is crucial for getting optimal results. Thorough and intuitive, RNA Sequence, Structure, Function: Computational and Bioinformatic Methods aids scientists in continuing to study key methods and principles of RNA bioinformatics.
Дополнительное описание: Concepts and Introduction to RNA Bioinformatics.- The Principles of RNA Structure Architecture.- The Determination of RNA Folding Nearest Neighbor Parameters.- Energy Directed RNA Structure Prediction.- Introduction to Stochastic Context Free Grammars.- A



Bioinformatics for DNA Sequence Analysis

Автор: David Posada
Название: Bioinformatics for DNA Sequence Analysis
ISBN: 1617378399 ISBN-13(EAN): 9781617378393
Издательство: Springer
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Цена: 20263.00 р.
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Описание: In Bioinformatics for DNA Sequence Analysis, experts provide practical guidance and troubleshooting advice for the computational analysis of DNA sequences, covering a range of issues and methods that demonstrate the vital relevance bioinformatics has today.

Bioinformatics Volume II: Structure, Function, and Applications

Автор: Jonathan M. Keith
Название: Bioinformatics Volume II: Structure, Function, and Applications
ISBN: 1493966111 ISBN-13(EAN): 9781493966110
Издательство: Springer
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Цена: 19564.00 р.
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Описание: This second edition provides updated and expanded chapters covering a broad sampling of useful and current methods in the rapidly developing and expanding field of bioinformatics.

High-Performance Computational Solutions in Protein Bioinformatics

Автор: Dariusz Mrozek
Название: High-Performance Computational Solutions in Protein Bioinformatics
ISBN: 3319069705 ISBN-13(EAN): 9783319069708
Издательство: Springer
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Цена: 6986.00 р.
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Описание: This work focuses on proteins and their structures, protein structure similarity searching at main representation levels and various techniques that can be used to accelerate similarity searches.

2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 2008)

Автор: Juan Manuel Corchado Rodr?guez; Francisco de Paz;
Название: 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 2008)
ISBN: 3540858601 ISBN-13(EAN): 9783540858607
Издательство: Springer
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Цена: 27950.00 р.
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Описание: New global approaches, such as Systems Biology, have been emerging replacing the reductionist view that dominated biology research in the last decades, requiring the coordinated efforts of biological researchers with those related to data analysis, mathematical modelling and computer science.

Fundamentals of Bioinformatics and Computational Biology

Автор: Gautam B. Singh
Название: Fundamentals of Bioinformatics and Computational Biology
ISBN: 3319383132 ISBN-13(EAN): 9783319383132
Издательство: Springer
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Цена: 23757.00 р.
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Описание: This book offers comprehensive coverage of all the core topics of bioinformatics, and includes practical examples completed using the MATLAB bioinformatics toolbox™. It is primarily intended as a textbook for engineering and computer science students attending advanced undergraduate and graduate courses in bioinformatics and computational biology. The book develops bioinformatics concepts from the ground up, starting with an introductory chapter on molecular biology and genetics. This chapter will enable physical science students to fully understand and appreciate the ultimate goals of applying the principles of information technology to challenges in biological data management, sequence analysis, and systems biology. The first part of the book also includes a survey of existing biological databases, tools that have become essential in today’s biotechnology research. The second part of the book covers methodologies for retrieving biological information, including fundamental algorithms for sequence comparison, scoring, and determining evolutionary distance. The main focus of the third part is on modeling biological sequences and patterns as Markov chains. It presents key principles for analyzing and searching for sequences of significant motifs and biomarkers. The last part of the book, dedicated to systems biology, covers phylogenetic analysis and evolutionary tree computations, as well as gene expression analysis with microarrays. In brief, the book offers the ideal hands-on reference guide to the field of bioinformatics and computational biology.

Computational Intelligence in Bioinformatics

Автор: Arpad Kelemen; Ajith Abraham; Yuehui Chen
Название: Computational Intelligence in Bioinformatics
ISBN: 364209550X ISBN-13(EAN): 9783642095504
Издательство: Springer
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Цена: 27251.00 р.
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Описание: Bioinformatics involve the creation and advancement of algorithms using techniques including computational intelligence, applied mathematics and statistics, informatics, and biochemistry to solve biological problems usually on the molecular level.

Bioinformatics of Genome Regulation and Structure II

Автор: Nikolay Kolchanov; Ralf Hofestaedt; Luciano Milane
Название: Bioinformatics of Genome Regulation and Structure II
ISBN: 1461497701 ISBN-13(EAN): 9781461497707
Издательство: Springer
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Цена: 23757.00 р.
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Описание: The last 15 years in development of biology were marked with accumulation of unprecedentedly huge arrays of experimental data. The information was amassed with exclusively high rates due to the advent of highly efficient experimental technologies that provided for high throughput genomic sequencing; of functional genomics technologies allowing investigation of expression dynamics of large groups of genes using expression DNA chips; of proteomics methods giving the possibility to analyze protein compositions of cells, tissues, and organs, assess the dynamics of the cell proteome, and reconstruct the networks of protein-protein interactions; and of metabolomics, in particular, high resolution mass spectrometry study of cell metabolites, and distribution of metabolic fluxes in the cells with a concurrent investigation of the dynamics of thousands metabolites in an individual cell. Analysis, comprehension, and use of the tremendous volumes of experimental data reflecting the intricate processes underlying the functioning of molecular genetic systems are unfeasible in principle without the systems approach and involvement of the state-of-the-art information and computer technologies and efficient mathematical methods for data analysis and simulation of biological systems and processes. The need in solving these problems initiated the birth of a new science— postgenomic bioinformatics or systems biology in silico.

Theory and Mathematical Methods in Bioinformatics

Автор: Shiyi Shen
Название: Theory and Mathematical Methods in Bioinformatics
ISBN: 3642094295 ISBN-13(EAN): 9783642094293
Издательство: Springer
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Цена: 23508.00 р.
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Описание: This monograph addresses, in a systematic and pedagogical manner, the mathematical methods and the algorithms required to deal with the molecularly based problems of bioinformatics.

Statistical Methods in Bioinformatics

Автор: Warren J. Ewens; Gregory R. Grant
Название: Statistical Methods in Bioinformatics
ISBN: 1441923020 ISBN-13(EAN): 9781441923028
Издательство: Springer
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Цена: 13059.00 р.
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Описание:

Advances in computers and biotechnology have had a profound impact on biomedical research, and as a result complex data sets can now be generated to address extremely complex biological questions. Correspondingly, advances in the statistical methods necessary to analyze such data are following closely behind the advances in data generation methods. The statistical methods required by bioinformatics present many new and difficult problems for the research community.

This book provides an introduction to some of these new methods. The main biological topics treated include sequence analysis, BLAST, microarray analysis, gene finding, and the analysis of evolutionary processes. The main statistical techniques covered include hypothesis testing and estimation, Poisson processes, Markov models and Hidden Markov models, and multiple testing methods.

The second edition features new chapters on microarray analysis and on statistical inference, including a discussion of ANOVA, and discussions of the statistical theory of motifs and methods based on the hypergeometric distribution. Much material has been clarified and reorganized.

The book is written so as to appeal to biologists and computer scientists who wish to know more about the statistical methods of the field, as well as to trained statisticians who wish to become involved with bioinformatics. The earlier chapters introduce the concepts of probability and statistics at an elementary level, but with an emphasis on material relevant to later chapters and often not covered in standard introductory texts. Later chapters should be immediately accessible to the trained statistician. Sufficient mathematical background consists of introductory courses in calculus and linear algebra. The basic biological concepts that are used are explained, or can be understood from the context, and standard mathematical concepts are summarized in an Appendix. Problems are provided at the end of each chapter allowing the reader to develop aspects of the theory outlined in the main text.

Warren J. Ewens holds the Christopher H. Brown Distinguished Professorship at the University of Pennsylvania. He is the author of two books, Population Genetics and Mathematical Population Genetics. He is a senior editor of Annals of Human Genetics and has served on the editorial boards of Theoretical Population Biology, GENETICS, Proceedings of the Royal Society B and SIAM Journal in Mathematical Biology. He is a fellow of the Royal Society and the Australian Academy of Science.

Gregory R. Grant is a senior bioinformatics researcher in the University of Pennsylvania Computational Biology and Informatics Laboratory. He obtained his Ph.D. in number theory from the University of Maryland in 1995 and his Masters in Computer Science from the University of Pennsylvania in 1999.

Comments on the First Edition. "This book would be an ideal text for a postgraduate course... and] is equally well suited to individual study.... I would recommend the book highly" (Biometrics). "Ewens and Grant have given us a very welcome introduction to what is behind those pretty graphical user] interfaces" (Naturwissenschaften.). "The authors do an excellent job of presenting the essence of the material without getting bogged down in mathematical details" (Journal. American Staistical. Association). "The authors have restructured classical material to a great extent and the new organization of the different topics is one of the outstanding services of the book" (Metrika).

High Performance Computational Methods for Biological Sequence Analysis

Автор: Tieng K. Yap; Ophir Frieder; Robert L. Martino
Название: High Performance Computational Methods for Biological Sequence Analysis
ISBN: 1461286026 ISBN-13(EAN): 9781461286028
Издательство: Springer
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Цена: 20962.00 р.
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Описание: High Performance Computational Methods for Biological Sequence Analysis presents biological sequence analysis using an interdisciplinary approach that integrates biological, mathematical and computational concepts.

Multiple Sequence Alignment Methods

Автор: David J Russell
Название: Multiple Sequence Alignment Methods
ISBN: 1493960474 ISBN-13(EAN): 9781493960477
Издательство: Springer
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Цена: 15372.00 р.
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Описание: Authoritative and practical, Multiple Sequence Alignment Methods provides a readily available resource which will allow practitioners to experiment with different algorithms and find the particular algorithm that is of most use in their application.


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