Computational Methods for Protein Structure Prediction and Modeling, Ying Xu; Dong Xu; Jie Liang

Автор: Zaccai, Nathan R. (University of Cambridge) Serdyuk, Igor N. Zaccai, Joseph
Название: Methods in Molecular Biophysics: Structure, Dynamics, Function for Biology and Medicine, 2 ed.
ISBN: 1107056373 ISBN-13(EAN): 9781107056374
Издательство: Cambridge Academ
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Цена: 9029.00 р.
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Описание: Reflecting the significant developments of the past decade, this textbook explains key physical methods in modern biology. Each method is illustrated through real-world examples, alongside background information designed for both physicists and biologists, making this an ideal resource for students in biophysics at science and medical schools.

Автор: Ying Xu; Dong Xu; Jie Liang
Название: Computational Methods for Protein Structure Prediction and Modeling
ISBN: 1441922067 ISBN-13(EAN): 9781441922069
Издательство: Springer
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Цена: 26120.00 р.
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Описание: Volume Two of this two-volume sequence presents a comprehensive overview of protein structure prediction methods and includes protein threading, De novo methods, applications to membrane proteins and protein complexes, structure-based drug design, as well as structure prediction as a systems problem.

Автор: Haber
Название: Computational Methods in Geophysical Electromagnetics
ISBN: 1611973791 ISBN-13(EAN): 9781611973792
Издательство: Mare Nostrum (Eurospan)
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Описание: Bridging the gap between theory and applications, this monograph provides a framework for the solution of electromagnetic imaging problems in geophysics. It provides a simple explanation of finite volume discretization; a full description of the basic concepts for solving inverse problems through optimization; a summary of applied electromagnetics methods; and MATLAB® code for efficient computation. The book will appeal to students and practitioners interested in computational science, data fitting, and applications to electromagnetics.

Автор: Yaoqi Zhou; Andrzej Kloczkowski; Eshel Faraggi; Yu
Название: Prediction of Protein Secondary Structure
ISBN: 1493964046 ISBN-13(EAN): 9781493964048
Издательство: Springer
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Цена: 20962.00 р.
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Описание: This thorough volume explores predicting one-dimensional functional properties, functional sites in particular, from protein sequences, an area which is getting more and more attention. Beginning with secondary structure prediction based on sequence only, the book continues by exploring secondary structure prediction based on evolution information, prediction of solvent accessible surface areas and backbone torsion angles, model building, global structural properties, functional properties, as well as visualizing interior and protruding regions in proteins. Written for the highly successful Methods in Molecular Biology series, the chapters include the kind of detail and implementation advice to ensure success in the laboratory.

Автор: Daisuke Kihara
Название: Protein Structure Prediction
ISBN: 1493903659 ISBN-13(EAN): 9781493903658
Издательство: Springer
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Цена: 14673.00 р.
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Автор: Daisuke Kihara
Название: Protein Structure Prediction
ISBN: 1493944614 ISBN-13(EAN): 9781493944613
Издательство: Springer
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Цена: 14673.00 р.
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Описание:

1. Protein Structure Modeling with MODELLER

Benjamin Webb, Andrej Sali

2. RaptorX Server: A Resource for Template-based Protein Structure Modeling

Morten Kдllberg, Gohar Margaryan, Sheng Wang, Jianzhu Ma and Jinbo Xu

3. The MULTICOM Protein Tertiary Structure Prediction System

Jilong Li, Debswapna Bhattacharya, Renzhi Cao, Badri Adhikari, Xin Deng, Jesse Eickholt and Jianlin Cheng

4. Modeling of Protein Side-chain Conformations with RASP

Miao Zhichao, Cao Yang and Jiang Taijiao

5. Direct Coupling Analysis for Protein Contact Prediction

Faruck Morcos, Terence Hwa, Josй N. Onuchic, Martin Weigt

6. ITScorePro - An Efficient Scoring Program for Evaluating the Energy Scores of Protein Structures for Structure Prediction

Sheng-You Huang and Xiaoqin Zou

7. Assessing the Quality of Modelled 3D Protein Structures using the ModFOLD Server

Daniel Barry Roche, Maria Teresa Buenavista, and Liam James McGuffin

8. 3D-SURFER 2.0: Web Platform for Real-Time Search and Characterization of Protein Surfaces Yi Xiong, Juan Esquivel-Rodriguez, Lee Sael, and Daisuke Kihara

9. SPOT-Seq-RNA: Predicting Protein-RNA Complex Structure and RNA-binding Function by Fold Recognition and Binding Affinity Prediction

Yuedong Yang, Huiying Zhao, Jihua Wang and Yaoqi Zhou

10. POODLE: Tools Predicting Intrinsically Disordered Regions of Amino Acid Sequence

Kana Shimizu

11. Prediction of Intrinsic Disorder in Proteins using MFDp2

Marcin J Mizianty, Vladimir Uversky and Lukasz Kurgan

12. Modeling protein-protein Complexes using the HADDOCK Webserver

G.C.P. van Zundert, and A.M.J.J. Bonvin

13. Predicting the Structure of Protein-protein Complexes using the SwarmDock Web Server

Mieczyslaw Torchala and Paul A. Bates

14. DOCK/PIERR: Web Server for Structure Prediction of Protein--Protein Complexes

S Viswanath, D.V.S. Ravikant and R Elber

15. Pairwise and Multimeric Protein-Protein Docking Using the LZerD Program Suite

Juan Esquivel-Rodriguez, Vianney Filos-Gonzalez, Bin Li, and Daisuke Kihara

16. Protocols for Efficient Simulations of Long Time Protein Dynamics using Coarse-grained CABS Model

Michal Jamroz, Andrzej Kolinski, Sebastian Kmiecik

Автор: Jan Gorodkin; Walter L. Ruzzo
Название: RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods
ISBN: 162703708X ISBN-13(EAN): 9781627037082
Издательство: Springer
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Цена: 27950.00 р.
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Описание: This new publication in the Methods in Molecular Biology series sets out detailed protocols for the targeted bioinformatics procedures dedicated to RNA structure. It features practical and algorithmic approaches as well as expert problem-solving advice.

Автор: Jan Gorodkin; Walter L. Ruzzo
Название: RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods
ISBN: 1493961659 ISBN-13(EAN): 9781493961658
Издательство: Springer
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Цена: 23058.00 р.
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Описание: The existence of genes for RNA molecules not coding for proteins (ncRNAs) has been recognized since the 1950's, but until recently, aside from the critically important ribosomal and transfer RNA genes, most focus has been on protein coding genes. However, a long series of striking discoveries, from RNA's ability to carry out catalytic function, to discovery of riboswitches, microRNAs and other ribo-regulators performing critical tasks in essentially all living organisms, has created a burgeoning interest in this primordial component of the biosphere. However, the structural characteristics and evolutionary constraints on RNA molecules are very different from those of proteins, necessitating development of a completely new suite of informatic tools to address these challenges. In RNA Sequence, Structure, Function: Computational and Bioinformatic Methods, expert researchers in the field describe a substantial and relevant fraction of these methodologies from both practical and computational/algorithmic perspectives. Focusing on both of these directions addresses both the biologist interested in knowing more about RNA bioinformatics as well as the bioinformaticist interested in more detailed aspects of the algorithms. Written in the highly successful Methods in Molecular Biology series format, the chapters include the kind of detailed description and implementation advice that is crucial for getting optimal results. Thorough and intuitive, RNA Sequence, Structure, Function: Computational and Bioinformatic Methods aids scientists in continuing to study key methods and principles of RNA bioinformatics.

Автор: Adam Liwo
Название: Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes
ISBN: 3662508478 ISBN-13(EAN): 9783662508473
Издательство: Springer
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Цена: 26120.00 р.
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Описание: With chapters contributed by leading scientists from 20 research groups worldwide, this volume provides an overview of modern computer-based techniques to compute the structure, properties, and dynamics of biomolecules and biomolecular processes.

Автор: G.D. Fasman
Название: Prediction of Protein Structure and the Principles of Protein Conformation
ISBN: 1461288606 ISBN-13(EAN): 9781461288602
Издательство: Springer
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Цена: 28732.00 р.
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