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From Protein Structure to Function with Bioinformatics, J. Rigden, Daniel (Ed.)


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Автор: J. Rigden, Daniel (Ed.)
Название:  From Protein Structure to Function with Bioinformatics
Перевод названия: Даниэль Дж. Ригден: От структуры белка до функций с биоинформатикой
ISBN: 9789402414820
Издательство: Springer
Классификация:





ISBN-10: 9402414827
Обложка/Формат: Paperback
Страницы: 503
Вес: 8.73 кг.
Дата издания: 25.07.2018
Язык: English
Издание: Softcover reprint of
Иллюстрации: 52 tables, color; 75 illustrations, color; 11 illustrations, black and white; xv, 503 p. 86 illus., 75 illus. in color.
Размер: 235 x 155
Читательская аудитория: Professional & vocational
Ссылка на Издательство: Link
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Поставляется из: Германии
Описание: This book is about protein structural bioinformatics and how it can help understand and predict protein function. It covers structure-based methods that can assign and explain protein function based on overall folds, characteristics of protein surfaces, occurrence of small 3D motifs, protein-protein interactions and on dynamic properties. Such methods help extract maximum value from new experimental structures, but can often be applied to protein models. The book also, therefore, provides comprehensive coverage of methods for predicting or inferring protein structure, covering all structural classes from globular proteins and their membrane-resident counterparts to amyloid structures and intrinsically disordered proteins. The book is split into two broad sections, the first covering methods to generate or infer protein structure, the second dealing with structure-based function annotation. Each chapter is written by world experts in the field. The first section covers methods ranging from traditional homology modelling and fold recognition to fragment-based ab initio methods, and includes a chapter, new for the second edition, on structure prediction using evolutionary covariance. Membrane proteins and intrinsically disordered proteins are each assigned chapters, while two new chapters deal with amyloid structures and means to predict modes of protein-protein interaction. The second section includes chapters covering functional diversity within protein folds and means to assign function based on surface properties and recurring motifs. Further chapters cover the key roles of protein dynamics in protein function and use of automated servers for function inference. The book concludes with two chapters covering case studies of structure prediction, based respectively on crystal structures and protein models, providing numerous examples of real-world usage of the methods mentioned previously. This book is targeted at postgraduate students and academic researchers. It is most obviously of interest to protein bioinformaticians and structural biologists, but should also serve as a guide to biologists more broadly by highlighting the insights that structural bioinformatics can provide into proteins of their interest.
Дополнительное описание: Preface.- Ab Initio Protein Structure Prediction.- Protein structures, interactions and function from evolutionary couplings.-Fold Recognition.- Comparative protein structure modelling.- Advances in computational methods for transmembrane protein structur



Methods in Molecular Biophysics: Structure, Dynamics, Function for Biology and Medicine, 2 ed.

Автор: Zaccai, Nathan R. (University of Cambridge) Serdyuk, Igor N. Zaccai, Joseph
Название: Methods in Molecular Biophysics: Structure, Dynamics, Function for Biology and Medicine, 2 ed.
ISBN: 1107056373 ISBN-13(EAN): 9781107056374
Издательство: Cambridge Academ
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Цена: 9029.00 р.
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Описание: Reflecting the significant developments of the past decade, this textbook explains key physical methods in modern biology. Each method is illustrated through real-world examples, alongside background information designed for both physicists and biologists, making this an ideal resource for students in biophysics at science and medical schools.

Bioinformatics Volume II: Structure, Function, and Applications

Автор: Jonathan M. Keith
Название: Bioinformatics Volume II: Structure, Function, and Applications
ISBN: 1493966111 ISBN-13(EAN): 9781493966110
Издательство: Springer
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Цена: 19564.00 р.
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Описание: This second edition provides updated and expanded chapters covering a broad sampling of useful and current methods in the rapidly developing and expanding field of bioinformatics.

Molecular Biology  Principles of Genome Function

Автор: Craig Nancy
Название: Molecular Biology Principles of Genome Function
ISBN: 0199658579 ISBN-13(EAN): 9780199658572
Издательство: Oxford Academ
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Цена: 9186.00 р.
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Описание: A fresh, distinctive approach to the teaching of molecular biology. With its focus on key principles, its emphasis on the commonalities that exist between the three kingdoms of life, and its integrated coverage of experimental methods and approaches, Molecular Biology is the perfect companion to any molecular biology course.

Protein Bioinformatics: An Algorithmic Approach to Sequence and Structure Analysis

Автор: Ingvar Eidhammer
Название: Protein Bioinformatics: An Algorithmic Approach to Sequence and Structure Analysis
ISBN: 0470848391 ISBN-13(EAN): 9780470848395
Издательство: Wiley
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Цена: 12189.00 р.
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Описание: This book takes the novel approach to cover both the sequence and structure analysis of proteins in one volume and from an algorithmic perspective. Key features of the book include:* Provides a comprehensive introduction to the analysis of protein sequence and structure analysis.

G Protein-Coupled Receptors: From Structure to Function

Название: G Protein-Coupled Receptors: From Structure to Function
ISBN: 1849731837 ISBN-13(EAN): 9781849731836
Издательство: Royal Society of Chemistry
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Цена: 35902.00 р.
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Описание: This book considers the relationship between structure and function in G protein-coupled receptors (GPCRs) and the implications for drug design.

Membrane Protein Structure and Function Characterization

Автор: Jean-Jacques Lacapere
Название: Membrane Protein Structure and Function Characterization
ISBN: 1493971492 ISBN-13(EAN): 9781493971497
Издательство: Springer
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Цена: 19564.00 р.
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Описание: In this present volume, different approaches are detailed to produce membrane proteins, purify them, study their function, determine their structure, and model them in membrane.

The Eukaryotic Replisome: a Guide to Protein Structure and Function

Автор: Stuart MacNeill
Название: The Eukaryotic Replisome: a Guide to Protein Structure and Function
ISBN: 9400797702 ISBN-13(EAN): 9789400797703
Издательство: Springer
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Цена: 30039.00 р.
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Описание:

Preface

1. Composition and dynamics of the eukaryotic replisome: a brief overview; Stuart A. MacNeill
1.1 Introduction
1.2 Replication origins and the origin recognition complex
1.3 Formation of the pre-RC at origins
1.4 The replisome progression complex
1.5 The replicative polymerases
1.6 Sliding clamp and clamp loader complexes
1.7 Okazaki fragment processing
1.8 Model systems for the studying eukaryotic replication
1.8.1 SV40
1.8.2 Yeast
1.8.3 Xenopus
1.8.4 Archaea
1.8.5 Other model systems
1.9 Conclusions
Acknowledgements
References

2. Evolutionary diversification of eukaryotic DNA replication machinery; Stephen J. Aves, Yuan Liu and Thomas A. Richards
2.1 Introduction
2.2 Eukaryotic diversity
2.3 Conservation of replisome proteins
2.4 Indispensable replisome proteins
2.5 Replisome proteins present in all eukaryotic supergroups
2.6 Replisome proteins not present in all supergroups
2.7 A complex ancestral replisome
2.8 Conclusions
References

3. The origin recognition complex: a biochemical and structural view; Huilin Li and Bruce Stillman
3.1 Introduction
3.2 The S. cerevisiae ORC
3.3 The S. pombe ORC
3.4 The D. melanogaster ORC
3.5 The H. sapiens ORC
3.6 Future perspectives
Acknowledgements
References

4. Archaeal Orc1/Cdc6 Proteins; Stephen D. Bell
4.1 Introduction
4.2 Origins of DNA replication in the Archaea
4.3 Orc1/Cdc6 Structure
4.4 Structures of Orc1/Cdc6 bound to DNA
4.5 Beyond binding origins - what do Orc1/Cdc6s do?Acknowledgements
References

5. Cdt1 and Geminin in DNA replication initiation; Christophe Caillat and Anastassis Perrakis
5.1 Cdt1 and Geminin: a functional preview5.2 The multiple faces of Geminin
5.2.1 Geminin functions in replication licensing
5.2.2 Geminin in the cell cycle
5.2.3 Geminin in cell differentiation
5.3 The structure of Geminin
5.3.1 The N-terminal domain
5.3.2 The coiled-coil domain
5.4 The structure of Cdt1
5.4.1 The N-terminal domain is highly regulated
5.4.2 The structurally conserved winged helix domains
5.4.3 The recruitment of Cdt1 on chromatin
5.5 The Cdt1-Geminin complex
5.5.1 The primary and secondary interfaces
5.5.2 The tertiary interface
5.5.3 Conformational change of the N-terminal domain?
5.6 Models for a Cdt1-Geminin molecular switch
5.7 Conclusions
References

6. MCM structure and mechanics: what we have learned from archaeal MCM: Ian M. Slaymaker and Xiaojiang S. Chen
6.1 Introduction
6.2 Complex organization: Hexamers and double hexamers
6.3 Helicase activity
6.3.1 Steric exclusion
6.3.2 Ploughshare
6.3.3 LTag looping model (or strand exclusion)
6.3.4 Rotary pump
6.4 Domains and features of an MCM subunit
6.4.1 N domain
6.4.2 C domain
6.4.2.1 ATP binding pocket
6.4.2.2 Hairpins, helices and inserts
6.4.2.3 Winged helix domain
6.5 Inter- and intra-subunit communication
6.6 Higher-order MCM oligomers
6.7 Conclusions
References

7. The Eukaryotic Mcm2-7 Replicative Helicase; Sriram Vijayraghavan and Anthony Schwacha
7.1 Introduction
7.2 The 'Mcm problem' and nonequivalent ATPase active sites
7.3 Discovery of Mcm2-7 helicase activity and the Mcm2/5 gate
7.3.1 Differences in circular ssDNA binding between Mcm2-7 and Mcm467
7.3.2 An in vitro condition that 'closes' Mcm2-7 stimulates its helicase activity
7.3.3 The Mcm2/5 'gate' model - the open conformation and DNA unwinding are mutually exclusive
7.4 The CMG complex
7.4.1 Discovery of the CMG complex
7.4.2 CMG structure - Cdc45 and GINS close the Mcm2/5 gate
7.4.3 Possible regu

Homocysteine in Protein Structure/Function and Human Disease

Автор: Hieronim Jakubowski
Название: Homocysteine in Protein Structure/Function and Human Disease
ISBN: 3709117208 ISBN-13(EAN): 9783709117200
Издательство: Springer
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Цена: 18167.00 р.
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Описание: Excess of homocysteine, a product of the metabolism of the essential amino acid methionine, is associated with poor health, is linked to heart and brain diseases in general human populations, and accelerates mortality in heart disease patients. Neurological and cardiovascular abnormalities occur in patients with severe genetic hyperhomocysteinemia and lead to premature death due to vascular complications. Although it is considered a non-protein amino acid, studies over the past dozen years have discovered mechanisms by which homocysteine becomes a component of proteins. Homocysteine-containing proteins lose their normal biological function and become auto-immunogenic and pro-thrombotic. In this book, the author, a pioneer and a leading contributor to the field, describes up-to date studies of the biological chemistry of homocysteine-containing proteins, as well as pathological consequences and clinical implications of their formation. This is a comprehensive account of the broad range of basic science and medical implications of homocysteine-containing proteins for health and disease.

Protein Structure — Function Relationship

Автор: D.L. Smith; Z.H. Zaidi
Название: Protein Structure — Function Relationship
ISBN: 1461380154 ISBN-13(EAN): 9781461380153
Издательство: Springer
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Цена: 14673.00 р.
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Описание: Although many pursue understanding of the relationship between protein structure and function for the thrill of pure science, the pay-off in a much broader sense is the ability to manipulate the Earth`s chemistry and biology to improve the quality of life for mankind.


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