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Video Bioinformatics: From Live Imaging to Knowledge, Bhanu Bir, Talbot Prue


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Автор: Bhanu Bir, Talbot Prue
Название:  Video Bioinformatics: From Live Imaging to Knowledge
ISBN: 9783319795263
Издательство: Springer
Классификация:





ISBN-10: 3319795260
Обложка/Формат: Paperback
Страницы: 381
Вес: 0.59 кг.
Дата издания: 14.03.2019
Серия: Computational biology
Язык: English
Издание: Softcover reprint of
Иллюстрации: 23 tables, black and white; 89 illustrations, color; 33 illustrations, black and white; xliii, 381 p. 122 illus., 89 illus. in color.
Размер: 23.39 x 15.60 x 2.21 cm
Читательская аудитория: Professional & vocational
Подзаголовок: From live imaging to knowledge
Ссылка на Издательство: Link
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Поставляется из: Германии
Описание:

This unique text/reference presents a selection of innovative computational techniques to enable the efficient analysis of biological processes in large video sequences and databases. Examples are drawn from numerous topics of significant current interest, such as 2D/3D live imaging, mild-traumatic brain injury, human embryonic stem cells, the growth of pollen tubes, cell tracking, and cell trafficking. To address various challenges, multiple imaging modalities are proposed at varying spatial and temporal resolutions, in conjunction with novel computational methods for video mining and knowledge discovery.

Topics and features: provides a detailed introduction to the field of video bioinformatics; examines the analysis and visualization of injured brain tissue in rodent models, using magnetic resonance imaging and optical coherence tomography; discusses segmentation of stem cell colonies and analysis of individual stem cells; describes the application of commercially available software to solve problems in video bioinformatics related to stem cell behavior in vitro; reviews video bioinformatics problems and solutions in plant and fungus biology; presents a high throughput method for quantifying DNA damage in cells, and a method that uses optogenetics to regulate protein transport in cultured cells; surveys the various software tools and databases available for use with video bioinformatics problems.

This pioneering volume is essential reading on the emerging, interdisciplinary field of video bioinformatics. The text will be of great benefit to researchers and graduate students from a wide range of different areas, including bioinformatics, bioengineering, plant sciences, cell, molecular and developmental biology, genetics and genomics.



Автор: Artur Lesk
Название: Introduction to Bioinformatics, 5 ed.- Oxford University Press, 2019 ISBN 9780198794141
ISBN: 0198794142 ISBN-13(EAN): 9780198794141
Издательство: Oxford Academ
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Цена: 8869.00 р.
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Описание: Active, accessible, and assuming no prior knowledge: the ideal text for biologists encountering bioinformatics for the first time.

Algorithms in Bioinformatics

Автор: Sung
Название: Algorithms in Bioinformatics
ISBN: 1420070339 ISBN-13(EAN): 9781420070330
Издательство: Taylor&Francis
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Цена: 13779.00 р.
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Описание: Presents an introduction to the algorithmic techniques applied in bioinformatics. For each topic, this title details the biological motivation, defines the corresponding computational problems, and includes examples to illustrate each algorithm.

Bioinformatics and Functional Genomics

Автор: Jonathan Pevsner
Название: Bioinformatics and Functional Genomics
ISBN: 1118581784 ISBN-13(EAN): 9781118581780
Издательство: Wiley
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Цена: 17733.00 р.
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Описание: The bestselling introduction to bioinformatics and genomics now in its third edition Widely received in its previous editions, Bioinformatics and Functional Genomics offers the most broad-based introduction to this explosive new discipline.

Video Bioinformatics

Автор: Bir Bhanu; Prue Talbot
Название: Video Bioinformatics
ISBN: 3319237233 ISBN-13(EAN): 9783319237237
Издательство: Springer
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Цена: 18167.00 р.
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Описание: The advances of live cell video imaging and high-throughput technologies for functional and chemical genomics provide unprecedented opportunities to understand how biological processes work in subcellular and multicellular systems. The interdisciplinary research field of Video Bioinformatics is defined by Bir Bhanu as the automated processing, analysis, understanding, data mining, visualization, query-based retrieval/storage of biological spatiotemporal events/data and knowledge extracted from dynamic images and microscopic videos. Video bioinformatics attempts to provide a deeper understanding of continuous and dynamic life processes. Genome sequences alone lack spatial and temporal information, and video imaging of specific molecules and their spatiotemporal interactions, using a range of imaging methods, are essential to understand how genomes create cells, how cells constitute organisms, and how errant cells cause disease. The book examines interdisciplinary research issues and challenges with examples that deal with organismal dynamics, intercellular and tissue dynamics, intracellular dynamics, protein movement, cell signaling and software and databases for video bioinformatics. Topics and Features • Covers a set of biological problems, their significance, live-imaging experiments, theory and computational methods, quantifiable experimental results and discussion of results. • Provides automated methods for analyzing mild traumatic brain injury over time, identifying injury dynamics after neonatal hypoxia-ischemia and visualizing cortical tissue changes during seizure activity as examples of organismal dynamics • Describes techniques for quantifying the dynamics of human embryonic stem cells with examples of cell detection/segmentation, spreading and other dynamic behaviors which are important for characterizing stem cell health • Examines and quantifies dynamic processes in plant and fungal systems such as cell trafficking, growth of pollen tubes in model systems such as Neurospora Crassa and Arabidopsis • Discusses the dynamics of intracellular molecules for DNA repair and the regulation of cofilin transport using video analysis • Discusses software, system and database aspects of video bioinformatics by providing examples of 5D cell tracking by FARSIGHT open source toolkit, a survey on available databases and software, biological processes for non-verbal communications and identification and retrieval of moth images This unique text will be of great interest to researchers and graduate students of Electrical Engineering, Computer Science, Bioengineering, Cell Biology, Toxicology, Genetics, Genomics, Bioinformatics, Computer Vision and Pattern Recognition, Medical Image Analysis, and Cell Molecular and Developmental Biology. The large number of example applications will also appeal to application scientists and engineers. Dr. Bir Bhanu is Distinguished Professor of Electrical & C omputer Engineering, Interim Chair of the Department of Bioengineering, Cooperative Professor of Computer Science & Engineering, and Mechanical Engineering and the Director of the Center for Research in Intelligent Systems, at the University of California, Riverside, California, USA. Dr. Prue Talbot is Professor of Cell Biology & Neuroscience and Director of the Stem Cell Center and Core at the University of California Riverside, California, USA.

Structural bioinformatics

Название: Structural bioinformatics
ISBN: 0470181052 ISBN-13(EAN): 9780470181058
Издательство: Wiley
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Цена: 18208.00 р.
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Описание: Structural Bioinformatics was the first major effort to show the application of the principles and basic knowledge of the larger field of bioinformatics to questions focusing on macromolecular structure.

Current trends in bioinformatics :

Автор: Wadhwa, Gulshan.
Название: Current trends in bioinformatics :
ISBN: 981107481X ISBN-13(EAN): 9789811074813
Издательство: Springer
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Цена: 20962.00 р.
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Описание: This book highlights the latest breakthrough developments in bioinformatics. It presents a series of timely, in-depth reviews, drug clinical trial studies, biodiversity informatics and thematic issues. In addition, it includes insightful reviews on advances in computational molecular/structural biology, which address areas such as computing in biomedicine and genomics, computational proteomics and systems biology, and metabolic pathway engineering. Innovations in these fields have direct impacts on key issues related to healthcare, medicine, genetic disorders, the development of agricultural products, renewable energy, and environmental protection. Written by respected leaders in the field and covering a wide range of topics involving the integration of biology with computer and information science, the book offers an ideal basis for teaching at the undergraduate and graduate levels. It can also be used for self-instruction by research investigators interested in applying bioinformatics-based analytical methods and information technologists working with academic and industrial laboratories.

From Protein Structure to Function with Bioinformatics

Автор: J. Rigden, Daniel (Ed.)
Название: From Protein Structure to Function with Bioinformatics
ISBN: 9402414827 ISBN-13(EAN): 9789402414820
Издательство: Springer
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Цена: 41925.00 р.
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Описание: This book is about protein structural bioinformatics and how it can help understand and predict protein function. It covers structure-based methods that can assign and explain protein function based on overall folds, characteristics of protein surfaces, occurrence of small 3D motifs, protein-protein interactions and on dynamic properties. Such methods help extract maximum value from new experimental structures, but can often be applied to protein models. The book also, therefore, provides comprehensive coverage of methods for predicting or inferring protein structure, covering all structural classes from globular proteins and their membrane-resident counterparts to amyloid structures and intrinsically disordered proteins. The book is split into two broad sections, the first covering methods to generate or infer protein structure, the second dealing with structure-based function annotation. Each chapter is written by world experts in the field. The first section covers methods ranging from traditional homology modelling and fold recognition to fragment-based ab initio methods, and includes a chapter, new for the second edition, on structure prediction using evolutionary covariance. Membrane proteins and intrinsically disordered proteins are each assigned chapters, while two new chapters deal with amyloid structures and means to predict modes of protein-protein interaction. The second section includes chapters covering functional diversity within protein folds and means to assign function based on surface properties and recurring motifs. Further chapters cover the key roles of protein dynamics in protein function and use of automated servers for function inference. The book concludes with two chapters covering case studies of structure prediction, based respectively on crystal structures and protein models, providing numerous examples of real-world usage of the methods mentioned previously. This book is targeted at postgraduate students and academic researchers. It is most obviously of interest to protein bioinformaticians and structural biologists, but should also serve as a guide to biologists more broadly by highlighting the insights that structural bioinformatics can provide into proteins of their interest.

Statistical Modelling and Machine Learning Principles for Bioinformatics Techniques, Tools, and Applications

Автор: Srinivasa K. G., Siddesh G. M., Manisekhar S. R.
Название: Statistical Modelling and Machine Learning Principles for Bioinformatics Techniques, Tools, and Applications
ISBN: 9811524440 ISBN-13(EAN): 9789811524448
Издательство: Springer
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Цена: 25155.00 р.
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Описание: This book discusses topics related to bioinformatics, statistics, and machine learning, presenting the latest research in various areas of bioinformatics.

Versatile Video Coding

Автор: Humberto Ochoa Dominguez, K.R. Rao
Название: Versatile Video Coding
ISBN: 8770220476 ISBN-13(EAN): 9788770220477
Издательство: Taylor&Francis
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Цена: 14086.00 р.
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Описание: Video is the main driver of bandwidth use, accounting for over 80 per cent of consumer Internet traffic. Video compression is a critical component of many of the available multimedia applications, it is necessary for storage or transmission of digital video over today’s band-limited networks. The majority of this video is coded using international standards developed in collaboration with ITU-T Study Group and MPEG. The MPEG family of video coding standards begun on the early 1990s with MPEG-1, developed for video and audio storage on CD-ROMs, with support for progressive video. MPEG-2 was standardized in 1995 for applications of video on DVD, standard and high definition television, with support for interlaced and progressive video. MPEG-4 part 2, also known as MPEG-2 video, was standardized in 1999 for applications of low- bit rate multimedia on mobile platforms and the Internet, with the support of object-based or content based coding by modeling the scene as background and foreground. Since MPEG-1, the main video coding standards were based on the so-called macroblocks. However, research groups continued the work beyond the traditional video coding architectures and found that macroblocks could limit the performance of the compression when using high-resolution video. Therefore, in 2013 the high efficiency video coding (HEVC) also known and H.265, was released, with a structure similar to H.264/AVC but using coding units with more flexible partitions than the traditional macroblocks. HEVC has greater flexibility in prediction modes and transform block sizes, also it has a more sophisticated interpolation and de blocking filters. In 2006 the VC-1 was released. VC-1 is a video codec implemented by Microsoft and the Microsoft Windows Media Video (VMW) 9 and standardized by the Society of Motion Picture and Television Engineers (SMPTE). In 2017 the Joint Video Experts Team (JVET) released a call for proposals for a new video coding standard initially called Beyond the HEVC, Future Video Coding (FVC) or known as Versatile Video Coding (VVC). VVC is being built on top of HEVC for application on Standard Dynamic Range (SDR), High Dynamic Range (HDR) and 360° Video. The VVC is planned to be finalized by 2020. This book presents the new VVC, and updates on the HEVC. The book discusses the advances in lossless coding and covers the topic of screen content coding. Technical topics discussed include: Beyond the High Efficiency Video Coding High Efficiency Video Coding encoder Screen content Lossless and visually lossless coding algorithms Fast coding algorithms Visual quality assessment Other screen content coding algorithms Overview of JPEG Series

Practical Bioinformatics

Автор: Bujnicki Janusz M.
Название: Practical Bioinformatics
ISBN: 3540206132 ISBN-13(EAN): 9783540206132
Издательство: Springer
Цена: 23757.00 р.
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Описание: The book is unique in that. It bridges the gap between bioinformaticists and molecular biologists, i.e. the developers and the users of computational methods for biological data analysis and in that it presents examples of practical applications of the bioinformatics tools in the "daily practice" of an experimental research scientist. The book starts with reviews on computational methods for protein sequence-structure-function analysis (sequence studies, structure prediction), followed by methods that explicitly utilize experimental data routinely obtained in the laboratory to improve the functional predictions. The second part comprises a series of examples on how particular applications of different types of bioinformatics methods in combination with experimental studies to validate the hypotheses have led to important scientific discoveries. Therefore, the book is a guide to application of bioinformatics methods in molecular biology, addressed mainly to the research scientists, postdocs, and advanced graduate students.


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