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Expressed Protein Ligation: Methods and Protocols, Vila-Perellу Miquel


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Автор: Vila-Perellу Miquel
Название:  Expressed Protein Ligation: Methods and Protocols
ISBN: 9781071604335
Издательство: Springer
Классификация:
ISBN-10: 1071604333
Обложка/Формат: Hardcover
Страницы: 362
Вес: 0.82 кг.
Дата издания: 07.03.2020
Серия: Methods in molecular biology
Язык: English
Издание: 1st ed. 2020
Иллюстрации: 67 illustrations, color; 28 illustrations, black and white; x, 362 p. 95 illus., 67 illus. in color.
Размер: 25.76 x 18.57 x 2.41 cm
Читательская аудитория: Professional & vocational
Подзаголовок: Methods and protocols
Ссылка на Издательство: Link
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Поставляется из: Германии
Описание: This book provides a comprehensive overview of Expressed Protein Ligation (EPL), detailing methods and protocols to generate site-specifically modified proteins. Chapters include an overview of the protein semi-synthesis field, as well as related areas that have contributed to the development of EPL such as protein splicing and peptide synthesis. Following the introductory chapters, the rest of the book guides readers through protocols to perform EPL reactions, methods to synthesize peptide thioesters and to perform peptide and protein ligations, label proteins inside living cells, protocols for the semi-synthesis of phorphorylated, glycosylated and ubiquitylated proteins, synthesis and assembly of assymetrically modified nucleosomes, use of ligation auxiliaries and synthesis of cyclic proteins, as well as novel desulfurization strategies and use of selective Cys side chain protection to obtain precisely modified proteins.Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Expressed Protein Ligation: Methods and Protocols will ensure successful implementation of protein semi-synthesis methods to further study the structure and function of proteins.
Дополнительное описание: Methods and Applications of Expressed Protein Ligation.- Protein Splicing: From the Foundations to the Development of Biotechnological Applications.- Identification, Characterization, and Optimization of Split Inteins.- Methods to Study the Structure and



Protein Ligation and Total Synthesis II

Автор: Lei Liu
Название: Protein Ligation and Total Synthesis II
ISBN: 3319369377 ISBN-13(EAN): 9783319369372
Издательство: Springer
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Цена: 28732.00 р.
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Описание: Each review within the volume critically surveys one aspect of that topic and places it within the context of the volume as a whole.

Protein Ligation and Total Synthesis I

Автор: Lei Liu
Название: Protein Ligation and Total Synthesis I
ISBN: 3319359746 ISBN-13(EAN): 9783319359748
Издательство: Springer
Рейтинг:
Цена: 28732.00 р.
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Описание: Each review within the volume critically surveys one aspect of that topic and places it within the context of the volume as a whole.

Enzyme-Mediated Ligation Methods

Автор: Timo Nuijens; Marcel Schmidt
Название: Enzyme-Mediated Ligation Methods
ISBN: 1493995456 ISBN-13(EAN): 9781493995455
Издательство: Springer
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Цена: 22359.00 р.
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Описание: This volume discusses different enzyme-catalyzed ligation methodologies for a variety of different chemical transformations. This book wants readers to view enzymes as a powerful tool in both academic and industrial research. Chapters in this book cover topics such as sortase A-mediated generation of site-specifically conjugated antibody-drug conjugates; omniligase-catalyzed inter- and intramolecular ligation; ligation catalyzed by microbial transglutaminase; peptide cyclization mediated by cyanobactin macrocyclases, butelase 1 and sortase A; using BioID as a tool for protein proximity labeling in living cells; and inducible, selective labeling of proteins via enzymatic oxidation of tyrosine. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.Cutting-edge and thorough, Enzyme-Mediated Ligation Methods is a valuable resource for students and scientists from different disciplines who are interested in using enzymatic strategies to answer their research questions.

Protein Synthesis: Methods and Protocols

Автор: Bhupendra Pushkar
Название: Protein Synthesis: Methods and Protocols
ISBN: 1774077035 ISBN-13(EAN): 9781774077030
Издательство: Mare Nostrum (Eurospan)
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Цена: 22730.00 р.
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Описание: Takes readers through the various ways in which proteins are synthesized and then further used for other applications. The book throws light on chemical reactions taking place in the process, and lays down different kinds of methods and the procedures that are followed in protein synthesis.

Protein Terminal Profiling: Methods and Protocols

Автор: Schilling Oliver
Название: Protein Terminal Profiling: Methods and Protocols
ISBN: 1493983172 ISBN-13(EAN): 9781493983179
Издательство: Springer
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Цена: 13275.00 р.
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Описание:

Preface...
Table of Contents...
Contributing Authors...

1. [14C]-Acetyl-CoenzymeA-Based In Vitro N-Terminal Acetylation Assay
Adrian Drazic and Thomas Arnesen

2. DTNB-Based Quantification of In Vitro Enzymatic N-Terminal Acetyltransferase Activity
Hеvard Foyn, Paul R. Thompson, and Thomas Arnesen

3. SILProNAQ: A Convenient Approach for Proteome-Wide Analysis of Protein N-Termini and N-Terminal Acetylation Quantitation
Willy V. Bienvenut, Carmela Giglione, and Thierry Meinnel

4. Profiling of Protein N-Termini and their Modifications in Complex Samples
Fatih Demir, Stefan Niedermaier, Jayachandran N. Kizhakkedathu, and Pitter F. Huesgen

5. Protease Substrate Profiling by N-Terminal COFRADIC
An Staes, Petra Van Damme, Evy Timmerman, Bart Ruttens, Elisabeth Stes, Kris Gevaert, and Francis Impens

6. Doublet N-Terminal Oriented Proteomics for N-Terminomics and Proteolytic Processing Identification
Benoit Westermann, Alvaro Sebastian Vaca Jacome, Magali Rompais, Christine Carapito, and Christine Schaeffer-Reiss

7. Multidimensional Analysis of Protease Substrates and their Cellular Origins in Mixed Secretomes from Multiple Cell Types
Pascal Schlage and Ulrich auf dem Keller

8. System-Wide Profiling of Protein Amino Termini from Formalin-Fixed, Paraffin-Embedded Tissue Specimens for the Identification of Novel Substrates
Zon W. Lai and Oliver Schilling

9. Identification of Carboxypeptidase Substrates by C-Terminal COFRADIC
Sebastian Tanco, Francesc Xavier Aviles, Kris Gevaert, Julia Lorenzo, and Petra Van Damme

10. ProC-TEL: Profiling of Protein C-Termini by Enzymatic Labeling
Wenwen Duan and Guoqiang Xu

11. Determining Protease Substrates within a Complex Protein Background using the PROtein TOpography and Migration Analysis Platform (PROTOMAP)
R.A. Fuhrman-Luck, L.M. Silva, M.L. Hastie, J.J. Gorman, J.A. Clements

12. Multiplexed Protease Specificity Profiling Using Isobaric Labeling
Joanna Tucher and Andreas Tholey

13. FPPS - Fast Profiling of Protease Specificity
Matej Vizovisek, Robert Vidmar, and Marko Fonovic

14. Profiling of Protease Cleavage Sites by Proteome-Derived Peptide Libraries and Quantitative Proteomics
Chia-yi Chen, Bettina Mayer, and Oliver Schilling

15. Prediction of Proteases Involved in Peptide Generation
Mercedes Arguello Casteleiro, Robert Stevens, and Julie Klein

16. Live-Cell Imaging of Protease Activity: Assays to Screen Therapeutic Approaches
Anita Chalasani, Kyungmin Ji, Mansoureh Sameni, Samia H. Mazumder, Yong Xu, Kamiar Moin, and Bonnie F. Sloane

17. Protein Translocation Assays to Probe Protease Function and Screen for Inhibitors
Angelina Hahlbrock, Dorothйe Gц wein, and Roland H. Stauber

18. Simultaneous Detection of Metalloprotease Activities in Complex Biological Samples Using the PrAMA (Proteolytic Activity Matrix Assay) Method
Catharina Conrad, Miles A. Miller, Jцrg W Bartsch, Uwe Schlomann, Douglas A. Lauffenburger

19. Synthesis and Application of Activity-Based Probes for Proteases
Tim Van Kersavond, Minh T. N. Nguyen, and Steven H. L. Verhelst

Protein Chromatography: Methods and Protocols

Автор: Walls Dermot, Loughran Sinйad T.
Название: Protein Chromatography: Methods and Protocols
ISBN: 1493961292 ISBN-13(EAN): 9781493961290
Издательство: Springer
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Цена: 15372.00 р.
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Описание: A prerequisite for elucidating the structure and function of any protein is the prior purification of that protein. This necessity has led to the development of many purification schemes and chromatographic methods for the isolation of native proteins from complex sources. In Protein Chromatography: Methods and Protocols, leading researchers present clear protocol-style chapters that are suitable for newcomers and experts alike. The book opens with vital topics in protein biochemistry, addressing such areas as protein stability and storage, avoiding proteolysis during chromatography, protein quantitation methods including immuno-qPCR, and the contrasting challenges that microfluidics and scale-up production pose to the investigator, and then it segues into key methods involving the generation and purification of recombinant proteins through recombinant antibody production and the tagging of proteins, amongst other means, as well as many variations on classic techniques such as ion-exchange and immunoaffinity chromatography. Written in the highly successful Methods in Molecular Biology™ series format, protocols chapters include introductions to their respective subjects, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and up-to-date, Protein Chromatography: Methods and Protocols will greatly aid scientists in establishing these essential techniques in their own laboratories and furthering our understanding of the many imperative functions of proteins.

Protein Function Prediction: Methods and Protocols

Автор: Kihara Daisuke
Название: Protein Function Prediction: Methods and Protocols
ISBN: 1493983687 ISBN-13(EAN): 9781493983681
Издательство: Springer
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Цена: 19564.00 р.
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Описание: Preface...
Table of Contents...
Contributing Authors...

1. Using PFP and ESG Protein Function Prediction Web Servers
Qing Wei, Joshua McGraw, Ishita Khan, and Daisuke Kihara

2. GHOSTX: A Fast Sequence Homology Search Tool for Functional Annotation of Metagenomic Data
Shuji Suzuki, Takashi Ishida, Masahito Ohue, Masanori Kakuta, and Yutaka Akiyama

3. From Gene Annotation to Function Prediction for Metagenomics
Fatemeh Sharifi and Yuzhen Ye

4. An Agile Functional Analysis of Metagenomic Data using SUPER-FOCUS
Genivaldo Gueiros Z. Silva, Fabyano A. C. Lopes, and Robert A. Edwards

5. MPFit: Computational Tool for Predicting Moonlighting Proteins
Ishita Khan, Joshua McGraw, and Daisuke Kihara

6. Predicting Secretory Proteins with SignalP
Henrik Nielsen

7. The ProFunc Function Prediction Server
Roman A. Laskowski

8. G-LoSA for Prediction of Protein-Ligand Binding Sites and Structures
Hui Sun Lee and Wonpil Im

9. Local Alignment of Ligand Binding Sites in Proteins for Polypharmacology and Drug Repositioning
Michal Brylinski

10. WATsite2.0 with PyMOL Plugin: Hydration Site Prediction and Visualization
Ying Yang, Bingjie Hu, and Markus A. Lill

11. Enzyme Annotation and Metabolic Reconstruction Using KEGG
Minoru Kanehisa

12. Ortholog Identification and Comparative Analysis of Microbial Genomes using MBGD and RECOG
Ikuo Uchiyama

13. Exploring Protein Function Using the Saccharomyces Genome Database
Edith D. Wong

14. Network-Based Gene Function Prediction in Mouse and Other Model Vertebrates using MouseNet Server
Eiru Kim and Insuk Lee

15. The FANTOM5 Computation Ecosystem: Genomic Information Hub for Promoters and Active Enhancers
Imad Abugessaisa, Shuhei Noguchi, Piero Carninci, and Takeya Kasukawa

16. Multi-Algorithm Particle Simulations with Spatiocyte
Satya N. V. Arjunan and Koichi Takahashi

Membrane Protein Structure and Function Characterization: Methods and Protocols

Автор: Lacapere Jean-Jacques
Название: Membrane Protein Structure and Function Characterization: Methods and Protocols
ISBN: 1493983997 ISBN-13(EAN): 9781493983995
Издательство: Springer
Рейтинг:
Цена: 19564.00 р.
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Описание: In this present volume, different approaches are detailed to produce membrane proteins, purify them, study their function, determine their structure, and model them in membrane.

Protein Crystallography: Methods and Protocols

Автор: Wlodawer Alexander, Dauter Zbigniew, Jaskolski Mariusz
Название: Protein Crystallography: Methods and Protocols
ISBN: 1493983636 ISBN-13(EAN): 9781493983636
Издательство: Springer
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Цена: 25155.00 р.
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Описание:

1. Expression and Purification of Recombinant Proteins in Escherichia Coli with a His6 or Dual His6-MBP Tag

Sreejith Raran-Kurussi and David S. Waugh

2. Protein Crystallization

Alexander McPherson

3. Advanced Methods of Protein Crystallization

Abel Moreno

4. The 'Sticky Patch' Model of Crystallization and Modification of Proteins for Enhanced Crystallizability

Zygmunt S. Derewenda and Adam Godzik

5. Crystallization of Membrane Proteins: and Overview

Andrii Ishchenko, Enrique Abola, and Vadim Cherezov

6. Locating and Visualizing Crystals for X-ray Diffraction Experiments

Michael Becker, David J. Kissick, and Craig M. Ogata

7. Collection of X-ray Diffraction Data from Macromolecular Crystals

Zbigniew Dauter

8. Identifying and Overcoming Crystal Pathologies: Disorder and Twinning

Michael C. Thompson

9. Applications of X-ray Micro-beam for Data Collection

Ruslan Sanishvili and Robert F. Fischetti

10. Serial Synchrotron X-ray Crystallography (SSX)

Kay Diederichs and Meitian Wang


11. Time-Resolved Macromolecular Crystallography at Modern X-ray Sources

Marius Schmidt

12. Structure Determination Using X-ray Free-electron Laser Pulses

Henry N. Chapman

13. Processing of XFEL Data

Thomas A. White

14. Many Ways to Derivatize Macromolecules and their Crystals for Phasing

Miroslawa Dauter and Zbigniew Dauter

15. Experimental Phasing: Substructure Solution and Density Modification as Implemented in SHELX

Andrea Thorn

16. Contemporary Use of Anomalous Diffraction in Biomolecular Structure Analysis

Qun Liu and Wayne A. Hendrickson

17. Long-Wavelength X-ray Diffraction and its Applications in Macromolecular Crystallography

Manfred S. Weiss

18. Acknowledging Errors: Advanced Molecular Replacement with Phaser

Airlie J. McCoy

19. Rosetta Structure Prediction as a Tool for Solving Difficult Molecular Replacement Problems

Frank DiMaio

20. Radiation Damage in Macromolecular Crystallography

Elspeth F. Garman and Martin Weik

21. Boxes of Model Building and Visualization

Dusan Turk

22. Structure Refinement at Atomic Resolution

Mariusz Jaskolski

23. Low Resolution Refinement of Atomic Models against Crystallographic Data

Robert A. Nicholls, Oleg Kovalevskiy, and Garib N. Murshudov

24. Stereochemistry and Validation of Macromolecular Structures

Alexander Wlodawer

25. Validation of Protein-Ligand Crystal Structure Models: Small Molecule and Peptide Ligands

Edwin Pozharski, Marc C. Deller and Bernhard Rupp

26. Protein Data Bank - the Single Global Macromolecular Structure Archive Managed by the Worldwide Protein Data Bank

Stephen K. Burley Helen M. Berman, Gerard J. Kleywegt, John L. Markley, Haruki Nakamura, and Sameer Velankar

27. Databases, Repositories and Other Data Resources in Structural Biology

Heping Zheng, Przemyslaw J. Porebski, Marek Grabowski, David R. Cooper, and Wladek Minor


Protein Tyrosine Phosphatases: Methods and Protocols

Автор: Pulido Rafael
Название: Protein Tyrosine Phosphatases: Methods and Protocols
ISBN: 1493981277 ISBN-13(EAN): 9781493981274
Издательство: Springer
Рейтинг:
Цена: 15372.00 р.
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Описание: This book provides coverage, methodology, and laboratory protocols on the more essential aspects of protein tyrosine phosphatase (PTP) function and regulation, including the use of standardized in vitro functional assays, suitable cell systems, and animal and microorganism models. Chapters covering state-of-the-art technical approaches suitable to decipher the physiologic roles of PTPs, and their involvement in tissue-specific functions, are also included, which will be of utility for both newcomers and experienced researchers in the field of tyrosine- and phosphoinositide- phosphorylation/dephosphorylation. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Protein Tyrosine Phosphatases: Methods and Protocols aims to aid researchers in better defining the common and individual features of the PTP family members and translating this knowledge into PTP-based therapy for human disease.

Protein Ligation and Total Synthesis I

Автор: Lei Liu
Название: Protein Ligation and Total Synthesis I
ISBN: 3319191853 ISBN-13(EAN): 9783319191850
Издательство: Springer
Рейтинг:
Цена: 34937.00 р.
Наличие на складе: Есть у поставщика Поставка под заказ.

Описание: Each review within the volume critically surveys one aspect of that topic and places it within the context of the volume as a whole. The most significant developments of the last 5 to 10 years are presented using selected examples to illustrate the principles discussed. The coverage is not intended to be an exhaustive summary of the field or include large quantities of data, but should rather be conceptual, concentrating on the methodological thinking that will allow the non-specialist reader to understand the information presented. Contributions also offer an outlook on potential future developments in the field.

Protein Ligation and Total Synthesis II

Автор: Lei Liu
Название: Protein Ligation and Total Synthesis II
ISBN: 3319191888 ISBN-13(EAN): 9783319191881
Издательство: Springer
Рейтинг:
Цена: 34937.00 р.
Наличие на складе: Есть у поставщика Поставка под заказ.

Описание: Each review within the volume critically surveys one aspect of that topic and places it within the context of the volume as a whole. The most significant developments of the last 5 to 10 years are presented using selected examples to illustrate the principles discussed. The coverage is not intended to be an exhaustive summary of the field or include large quantities of data, but should rather be conceptual, concentrating on the methodological thinking that will allow the non-specialist reader to understand the information presented. Contributions also offer an outlook on potential future developments in the field.


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