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Polycomb Group Proteins: Methods and Protocols, Lanzuolo Chiara, Bodega Beatrice


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Автор: Lanzuolo Chiara, Bodega Beatrice
Название:  Polycomb Group Proteins: Methods and Protocols
ISBN: 9781493981816
Издательство: Springer
Классификация:
ISBN-10: 1493981811
Обложка/Формат: Paperback
Страницы: 325
Вес: 0.60 кг.
Дата издания: 27.06.2018
Серия: Methods in molecular biology
Язык: English
Издание: Softcover reprint of
Иллюстрации: 40 tables, color; 23 illustrations, color; 17 illustrations, black and white; xv, 325 p. 40 illus., 23 illus. in color.
Размер: 25.40 x 17.78 x 1.83 cm
Читательская аудитория: General (us: trade)
Подзаголовок: Methods and protocols
Ссылка на Издательство: Link
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Поставляется из: Германии
Описание:

Mapping the Function of Polycomb Proteins.- Chromatin Immunoprecipitation.- Chromatin preparation and Chromatin Immuno-Precipitation from Drosophila embryos.- ChIP-seq data processing for PcG proteins and associated histone modifications.- Analysis of single locus replication timing in asynchronous cycling cells.- Non coding RNA interplay with the genome.- RIP: RNA Immunoprecipitation.- Capture Hybridization Analysis of DNA Targets.- Identification of RNA-protein interactions through in-vitro RNA pull-down assays.- Understanding RNA-chromatin interactions using Chromatin Isolation by RNA Purification (ChIRP).- Analysis RNA-seq and non coding RNA.- The dynamics of Polycomb complexes.- Fluorescence resonance energy transfer microscopy for measuring chromatin complex structure and dynamics.- Analysis of endogenous protein interactions of Polycomb-group of proteins in mouse embryonic stem cells.- Determination of Polycomb group of proteins compartmentalization through chromatin fractionation procedure.- An Automatic Segmentation Method Combining an Active Contour Model and a Classification Technique for Detecting Polycomb-group Proteins in High-Throughput Microscopy Images.- Polymer physics of the large-scale structure of chromatin.- Chromosome Conformation Capture in Drosophila.- Chromosome Conformation Capture in primary human cells.- Determination of high-resolution 3D chromatin organization using Circular Chromosome Conformation Capture (4C-seq).- Chromosome Conformation Capture on Chip (4C): Data Processing.- In vivo models to address the function of Polycomb Group Proteins.- A rapid TALEN assembly protocol.- Following the motion of Polycomb bodies in living Drosophila embryos.- Reprogramming of Somatic Cells towards Pluripotency by Cell Fusion.- Imaginal discs transplantation in Drosophila.- Isolation and culture of muscle stem cells.


Дополнительное описание: Mapping the Function of Polycomb Proteins.- Chromatin Immunoprecipitation.- Chromatin preparation and Chromatin Immuno-Precipitation from Drosophila embryos.- ChIP-seq data processing for PcG proteins and associated histone modifications.- Analysis of sin



Polycomb Group Proteins

Автор: Lanzuolo
Название: Polycomb Group Proteins
ISBN: 1493963783 ISBN-13(EAN): 9781493963782
Издательство: Springer
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Цена: 20962.00 р.
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Описание: This volume presents the most recent technologies used in the Polycomb Group Proteins (PcG) field. Chapters detail state-of-the-art methods, creating a unique and comprehensive reference source for investigating Polycomb function in the nucleus. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.Authoritative and cutting-edge, Polycomb Group Proteins: Method and Protocols aims to ensure successful results in the further study of this vital field.

Protein Synthesis: Methods and Protocols

Автор: Bhupendra Pushkar
Название: Protein Synthesis: Methods and Protocols
ISBN: 1774077035 ISBN-13(EAN): 9781774077030
Издательство: Mare Nostrum (Eurospan)
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Цена: 22730.00 р.
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Описание: Takes readers through the various ways in which proteins are synthesized and then further used for other applications. The book throws light on chemical reactions taking place in the process, and lays down different kinds of methods and the procedures that are followed in protein synthesis.

Ccn Proteins: Methods and Protocols

Автор: Takigawa Masaharu
Название: Ccn Proteins: Methods and Protocols
ISBN: 1493981978 ISBN-13(EAN): 9781493981977
Издательство: Springer
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Цена: 17468.00 р.
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Описание: This volume provides a comprehensive guide on the Cyr61 (Cysteine-rich 61) (CCN) family of proteins and genes from basic research to cutting-edge methodologies and state-of-the-art techniques.

Argonaute Proteins: Methods and Protocols

Автор: Hobman Tom C., Duchaine Thomas F.
Название: Argonaute Proteins: Methods and Protocols
ISBN: 1493958275 ISBN-13(EAN): 9781493958276
Издательство: Springer
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Цена: 20263.00 р.
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Описание: With the rapid proliferation of RNAi applications in basic and clinical sciences, the challenge has now become understanding how components of RNAi machinery function together in a regulated manner. Argonaute proteins are the central effectors of RNAi and are highly conserved among eukaryotes and some archaebacteria. These RNA-binding proteins use small guide RNAs to silence expression of genes at the mRNA and DNA levels. In Argonaute Proteins: Methods and Protocols, expert researchers in this burgeoning field provide detailed, up-to-date methods to study Argonaute protein functions and interactions in a wide variety of cell types ranging from yeast to mammalian systems, as well as in vitro. Written in the highly successful Methods in Molecular Biology™ series format, chapters include brief introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Practical and authoritative, Argonaute Proteins: Methods and Protocols serves as a vital reference for both experienced and novice scientists approaching the vast complexities of RNAi research.

High-Throughput Glycomics and Glycoproteomics: Methods and Protocols

Автор: Lauc Gordan, Wuhrer Manfred
Название: High-Throughput Glycomics and Glycoproteomics: Methods and Protocols
ISBN: 1493982176 ISBN-13(EAN): 9781493982172
Издательство: Springer
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Цена: 15372.00 р.
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Modeling Peptide-Protein Interactions: Methods and Protocols

Автор: Schueler-Furman Ora, London Nir
Название: Modeling Peptide-Protein Interactions: Methods and Protocols
ISBN: 1493983024 ISBN-13(EAN): 9781493983025
Издательство: Springer
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Цена: 11878.00 р.
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Описание: This volume covers an array of techniques available for studying peptide-protein docking and design. The book is divided into four sections: peptide binding site prediction; peptide-protein docking; prediction and design of peptide binding specificity; and the design of inhibitory peptides. The chapters in Modeling Peptide-Protein Interactions: Methods and Protocols cover topics such as the usage of ACCLUSTER and PeptiMap for peptide binding site prediction; AnchorDock and ATTRACT for blind, flexible docking of peptides to proteins; flexible peptide docking using HADDOCK and FlexPepDock; identifying loop-mediated protein-protein interactions using LoopFinder; and protein-peptide interaction design using PinaColada. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary details for successful application of the different approaches and step-by-step, readily reproducible protocols, as well as tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Modeling Peptide-Protein Interactions: Methods and Protocols provides a diverse and unified overview of this rapidly advancing field of major interest and applicability.

Protein Chromatography: Methods and Protocols

Автор: Walls Dermot, Loughran Sinйad T.
Название: Protein Chromatography: Methods and Protocols
ISBN: 1493961292 ISBN-13(EAN): 9781493961290
Издательство: Springer
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Цена: 15372.00 р.
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Описание: A prerequisite for elucidating the structure and function of any protein is the prior purification of that protein. This necessity has led to the development of many purification schemes and chromatographic methods for the isolation of native proteins from complex sources. In Protein Chromatography: Methods and Protocols, leading researchers present clear protocol-style chapters that are suitable for newcomers and experts alike. The book opens with vital topics in protein biochemistry, addressing such areas as protein stability and storage, avoiding proteolysis during chromatography, protein quantitation methods including immuno-qPCR, and the contrasting challenges that microfluidics and scale-up production pose to the investigator, and then it segues into key methods involving the generation and purification of recombinant proteins through recombinant antibody production and the tagging of proteins, amongst other means, as well as many variations on classic techniques such as ion-exchange and immunoaffinity chromatography. Written in the highly successful Methods in Molecular Biology™ series format, protocols chapters include introductions to their respective subjects, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and up-to-date, Protein Chromatography: Methods and Protocols will greatly aid scientists in establishing these essential techniques in their own laboratories and furthering our understanding of the many imperative functions of proteins.

Protein-Carbohydrate Interactions: Methods and Protocols

Автор: Abbott D. Wade, Lammerts Van Bueren Alicia
Название: Protein-Carbohydrate Interactions: Methods and Protocols
ISBN: 1493983326 ISBN-13(EAN): 9781493983322
Издательство: Springer
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Цена: 19564.00 р.
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Описание: This volume is a wide-ranging tool for studying protein-carbohydrate interactions that extend from traditional biochemical methods to state-of-the-art techniques.

Heterologous Protein Production in Cho Cells: Methods and Protocols

Автор: Meleady Paula
Название: Heterologous Protein Production in Cho Cells: Methods and Protocols
ISBN: 1493983563 ISBN-13(EAN): 9781493983568
Издательство: Springer
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Цена: 16070.00 р.
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Описание: This volume discusses protocols that cover genetic manipulation of Chinese hamster ovary (CHO) cells for recombinant protein production, and protocols for the characterization of CHO cells using ‘omic approaches. This book also explores methods that discuss the genome editing tool, CRISPR/Cas9, and the characterization of recombinant protein products, such as glycosylation and host cell protein analysis. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Comprehensive and cutting-edge, Heterologous Protein Production in CHO Cells: Methods and Protocols is a valuable resource for scientists and researchers who are interested in further studying cell production in CHO cells.

Cytoskeleton Methods and Protocols

Автор: Ray H. Gavin
Название: Cytoskeleton Methods and Protocols
ISBN: 1617796492 ISBN-13(EAN): 9781617796494
Издательство: Springer
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Цена: 20263.00 р.
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Описание: In this cutting-edge book, internationally renowned experts present techniques which reflect many of the recent technological advances in experimental tools for cytoskeleton research. There is emphasis on animal, plant, protist, and fungal model systems.

Protein Terminal Profiling: Methods and Protocols

Автор: Schilling Oliver
Название: Protein Terminal Profiling: Methods and Protocols
ISBN: 1493983172 ISBN-13(EAN): 9781493983179
Издательство: Springer
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Цена: 13275.00 р.
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Описание:

Preface...
Table of Contents...
Contributing Authors...

1. [14C]-Acetyl-CoenzymeA-Based In Vitro N-Terminal Acetylation Assay
Adrian Drazic and Thomas Arnesen

2. DTNB-Based Quantification of In Vitro Enzymatic N-Terminal Acetyltransferase Activity
Hеvard Foyn, Paul R. Thompson, and Thomas Arnesen

3. SILProNAQ: A Convenient Approach for Proteome-Wide Analysis of Protein N-Termini and N-Terminal Acetylation Quantitation
Willy V. Bienvenut, Carmela Giglione, and Thierry Meinnel

4. Profiling of Protein N-Termini and their Modifications in Complex Samples
Fatih Demir, Stefan Niedermaier, Jayachandran N. Kizhakkedathu, and Pitter F. Huesgen

5. Protease Substrate Profiling by N-Terminal COFRADIC
An Staes, Petra Van Damme, Evy Timmerman, Bart Ruttens, Elisabeth Stes, Kris Gevaert, and Francis Impens

6. Doublet N-Terminal Oriented Proteomics for N-Terminomics and Proteolytic Processing Identification
Benoit Westermann, Alvaro Sebastian Vaca Jacome, Magali Rompais, Christine Carapito, and Christine Schaeffer-Reiss

7. Multidimensional Analysis of Protease Substrates and their Cellular Origins in Mixed Secretomes from Multiple Cell Types
Pascal Schlage and Ulrich auf dem Keller

8. System-Wide Profiling of Protein Amino Termini from Formalin-Fixed, Paraffin-Embedded Tissue Specimens for the Identification of Novel Substrates
Zon W. Lai and Oliver Schilling

9. Identification of Carboxypeptidase Substrates by C-Terminal COFRADIC
Sebastian Tanco, Francesc Xavier Aviles, Kris Gevaert, Julia Lorenzo, and Petra Van Damme

10. ProC-TEL: Profiling of Protein C-Termini by Enzymatic Labeling
Wenwen Duan and Guoqiang Xu

11. Determining Protease Substrates within a Complex Protein Background using the PROtein TOpography and Migration Analysis Platform (PROTOMAP)
R.A. Fuhrman-Luck, L.M. Silva, M.L. Hastie, J.J. Gorman, J.A. Clements

12. Multiplexed Protease Specificity Profiling Using Isobaric Labeling
Joanna Tucher and Andreas Tholey

13. FPPS - Fast Profiling of Protease Specificity
Matej Vizovisek, Robert Vidmar, and Marko Fonovic

14. Profiling of Protease Cleavage Sites by Proteome-Derived Peptide Libraries and Quantitative Proteomics
Chia-yi Chen, Bettina Mayer, and Oliver Schilling

15. Prediction of Proteases Involved in Peptide Generation
Mercedes Arguello Casteleiro, Robert Stevens, and Julie Klein

16. Live-Cell Imaging of Protease Activity: Assays to Screen Therapeutic Approaches
Anita Chalasani, Kyungmin Ji, Mansoureh Sameni, Samia H. Mazumder, Yong Xu, Kamiar Moin, and Bonnie F. Sloane

17. Protein Translocation Assays to Probe Protease Function and Screen for Inhibitors
Angelina Hahlbrock, Dorothйe Gц wein, and Roland H. Stauber

18. Simultaneous Detection of Metalloprotease Activities in Complex Biological Samples Using the PrAMA (Proteolytic Activity Matrix Assay) Method
Catharina Conrad, Miles A. Miller, Jцrg W Bartsch, Uwe Schlomann, Douglas A. Lauffenburger

19. Synthesis and Application of Activity-Based Probes for Proteases
Tim Van Kersavond, Minh T. N. Nguyen, and Steven H. L. Verhelst

Protein Supersecondary Structures: Methods and Protocols

Автор: Kister Alexander E.
Название: Protein Supersecondary Structures: Methods and Protocols
ISBN: 1493991604 ISBN-13(EAN): 9781493991600
Издательство: Springer
Рейтинг:
Цена: 20962.00 р.
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Описание:

This second edition volume expands on the previous edition with an update on the latest developments in the field and new techniques used to study secondary and supersecondary structures (SSS) in proteins. Chapters in this book discuss topics such as sequence and structural features of different SSS elements; software used for the automatic annotation of secondary structure elements in proteins; the new developments in secondary and SSS prediction and the modern approaches for energy landscape calculation; protein misfolding and amyloid structural formation; analysis of ‘transformer proteins’; discovery of the structure of the hydrophobic nucleus; and discussions of the main principles of protein structures formation. The contributing authors of the volume are the eminent experts in the field of protein research and bioinformatics. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Cutting-edge and authoritative, Protein Supersecondary Structures: Methods and Protocols, Second Edition is a valuable resource for researchers who are interested in learning more about the relationship between amino acids sequences and protein structures, the evolution of proteins and the dynamics of protein formation.

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